MXO02419.3prime Sequence
731 bp (685 high quality bases) assembled on 2006-12-21
> MXO02419.3prime
ATGGTCTAGAAAGCTTGCATGTGTAGTCTCAATTATGATTTCGTGCGTAT
CCAGATCGGGCACGGCAAACTTCATGGGCAAATAGTCGTCTGGATGCATG
TGGGACATCTGGTTAACCTCCAGCTGGGCCCTTTCGTGGTCCTCATGGCA
CTTGGCTTCGTGCTTCTCATAGTCAGCGAAGGTATCAAAGATGGCCCGAC
ACACCATGCATTCGAAAAAGCTTGGTTTCTGCTCCGACTCAAGCCGTTCC
CTGGCCAGGGCGGCAGCCGCCTGGATAGAGGCGGGCACGTCCACATCGAC
GCCCTCCTTTATGTGCGACTGCAAGTGGCGCTTAAAGTTTGACAGCTGGG
TGAAGCCCTTCTCGCAGTAATTACACTGGTAGGGCTTGGCGTTGAGGTGG
CCAAGCTTGTGTTTCTTGAGGTTGACCAGCTGGGAAAAGTACCTGCCGCA
TCGCTGGCAGCGGAACGGCTTCTCGCCAGTGTGTGTCATCTTGTGGCGCT
TCATGTTGCTCTGCTGGGTGAAGGACTTGTTGCAGAAGTTACAGGTGAAT
GGCCGCTCCCCGCTGTGCACCGCATAGTGGCGCTGCAGGTTCACAGCCTG
GGCGAAGGCCTTCGAGCAAATGTTACACACGAAGGGCCGCACATCGTTGT
GCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGCG
CACAGCTTGCACTCGTAGGTGGTCTTGTTGT
MXO02419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-PA | 837 | CG17385-RA | 122..834 | 731..19 | 3490 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 1853 | CG17385-RB | 283..995 | 731..19 | 3520 | 99.6 | Minus |
CG17385-RA | 1192 | CG17385-RA | 283..995 | 731..19 | 3520 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14410725..14411232 | 224..731 | 2495 | 99.4 | Plus |
2R | 25286936 | 2R | 14410214..14410418 | 19..223 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:47 has no hits.
MXO02419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:33 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 122..837 | 18..731 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 122..837 | 18..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:19 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 283..995 | 19..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:07 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 283..995 | 19..731 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:07 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14410214..14410418 | 19..223 | 100 | <- | Plus |
2R | 14410725..14411232 | 224..731 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:19 Download gff for
MXO02419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10297719..10297923 | 19..223 | 100 | <- | Plus |
arm_2R | 10298230..10298737 | 224..731 | 99 | | Plus |
MXO02419.5prime Sequence
858 bp (853 high quality bases) assembled on 2006-12-21
> MXO02419.5prime
CAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGGTGGCCAAT
CAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAGCGGGATCA
GACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCACCTACGAGT
GCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGGATCGTCAC
ATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATTTGCTCGAA
GGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGTGCACAGCG
GGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCACCCAGCAG
AGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAGCCGTTCCG
CTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCTCAAGAAAC
ACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATTACTGCGAG
AAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAGTCGCACAT
AAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGCGGCTGCCG
CCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCTTTTTCGAA
TGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTATGAGAAGCA
CGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGAGGTTAACC
AGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGTTTGCCGTG
CCCGATCTGGATACGCACGAAATCATAATTGAGACTACACATGCAAGCTT
TCTAGATC
MXO02419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-PA | 837 | CG17385-RA | 1..834 | 9..842 | 4095 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 1853 | CG17385-RB | 158..995 | 5..842 | 4130 | 99.5 | Plus |
CG17385-RA | 1192 | CG17385-RA | 158..995 | 5..842 | 4130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14410725..14411284 | 637..78 | 2755 | 99.5 | Minus |
2R | 25286936 | 2R | 14410214..14410418 | 842..638 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 14411343..14411415 | 77..5 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:40 has no hits.
MXO02419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:35 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..837 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..837 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:41 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 155..995 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:37 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 155..995 | 1..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:37 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14410214..14410418 | 638..842 | 100 | <- | Minus |
2R | 14410725..14411284 | 78..637 | 99 | <- | Minus |
2R | 14411343..14411418 | 1..77 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:41 Download gff for
MXO02419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10297719..10297923 | 638..842 | 100 | <- | Minus |
arm_2R | 10298230..10298789 | 78..637 | 99 | <- | Minus |
arm_2R | 10298848..10298923 | 1..77 | 96 | | Minus |