Clone MXO02419 Report

Search the DGRC for MXO02419

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:19
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17385-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02419.3prime Sequence

731 bp (685 high quality bases) assembled on 2006-12-21

> MXO02419.3prime
ATGGTCTAGAAAGCTTGCATGTGTAGTCTCAATTATGATTTCGTGCGTAT
CCAGATCGGGCACGGCAAACTTCATGGGCAAATAGTCGTCTGGATGCATG
TGGGACATCTGGTTAACCTCCAGCTGGGCCCTTTCGTGGTCCTCATGGCA
CTTGGCTTCGTGCTTCTCATAGTCAGCGAAGGTATCAAAGATGGCCCGAC
ACACCATGCATTCGAAAAAGCTTGGTTTCTGCTCCGACTCAAGCCGTTCC
CTGGCCAGGGCGGCAGCCGCCTGGATAGAGGCGGGCACGTCCACATCGAC
GCCCTCCTTTATGTGCGACTGCAAGTGGCGCTTAAAGTTTGACAGCTGGG
TGAAGCCCTTCTCGCAGTAATTACACTGGTAGGGCTTGGCGTTGAGGTGG
CCAAGCTTGTGTTTCTTGAGGTTGACCAGCTGGGAAAAGTACCTGCCGCA
TCGCTGGCAGCGGAACGGCTTCTCGCCAGTGTGTGTCATCTTGTGGCGCT
TCATGTTGCTCTGCTGGGTGAAGGACTTGTTGCAGAAGTTACAGGTGAAT
GGCCGCTCCCCGCTGTGCACCGCATAGTGGCGCTGCAGGTTCACAGCCTG
GGCGAAGGCCTTCGAGCAAATGTTACACACGAAGGGCCGCACATCGTTGT
GCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGCG
CACAGCTTGCACTCGTAGGTGGTCTTGTTGT

MXO02419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-PA 837 CG17385-RA 122..834 731..19 3490 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 1853 CG17385-RB 283..995 731..19 3520 99.6 Minus
CG17385-RA 1192 CG17385-RA 283..995 731..19 3520 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14410725..14411232 224..731 2495 99.4 Plus
2R 25286936 2R 14410214..14410418 19..223 1025 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:24:47 has no hits.

MXO02419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:33 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 122..837 18..731 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 122..837 18..731 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:19 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 283..995 19..731 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:07 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 283..995 19..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:07 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14410214..14410418 19..223 100 <- Plus
2R 14410725..14411232 224..731 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:19 Download gff for MXO02419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10297719..10297923 19..223 100 <- Plus
arm_2R 10298230..10298737 224..731 99   Plus

MXO02419.5prime Sequence

858 bp (853 high quality bases) assembled on 2006-12-21

> MXO02419.5prime
CAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGGTGGCCAAT
CAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAGCGGGATCA
GACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCACCTACGAGT
GCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGGATCGTCAC
ATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATTTGCTCGAA
GGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGTGCACAGCG
GGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCACCCAGCAG
AGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAGCCGTTCCG
CTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCTCAAGAAAC
ACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATTACTGCGAG
AAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAGTCGCACAT
AAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGCGGCTGCCG
CCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCTTTTTCGAA
TGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTATGAGAAGCA
CGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGAGGTTAACC
AGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGTTTGCCGTG
CCCGATCTGGATACGCACGAAATCATAATTGAGACTACACATGCAAGCTT
TCTAGATC

MXO02419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-PA 837 CG17385-RA 1..834 9..842 4095 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 1853 CG17385-RB 158..995 5..842 4130 99.5 Plus
CG17385-RA 1192 CG17385-RA 158..995 5..842 4130 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14410725..14411284 637..78 2755 99.5 Minus
2R 25286936 2R 14410214..14410418 842..638 1025 100 Minus
2R 25286936 2R 14411343..14411415 77..5 350 98.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:11:40 has no hits.

MXO02419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:35 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..837 9..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..837 9..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:41 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 155..995 1..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:37 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 155..995 1..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:37 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14410214..14410418 638..842 100 <- Minus
2R 14410725..14411284 78..637 99 <- Minus
2R 14411343..14411418 1..77 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:41 Download gff for MXO02419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10297719..10297923 638..842 100 <- Minus
arm_2R 10298230..10298789 78..637 99 <- Minus
arm_2R 10298848..10298923 1..77 96   Minus