Clone MXO02420 Report

Search the DGRC for MXO02420

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:20
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17568-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02420.3prime Sequence

950 bp (799 high quality bases) assembled on 2006-12-21

> MXO02420.3prime
ATGGTCTAGAAAGCTTGCGTTTTCTGTTGTTCCTTTTGGTAACTTTTGAG
TCATAACGCGAAGTTCATCCAACGTTGGAACATTGAGGCGAGAGGGCAAC
CGTGCTCCATCCTCCTGCTGAACTTCCTGCGGATGTTTCTTGAGCTTGTG
CGACCGGCAATTGGCATTACAGGCAAAGGACTTGCCACAGTAGTTGCAAA
CGTACGGTCGCAGCCCCGTGTGGCTCAGCAAGTGGGTCTTGAGAGTCTTT
GAGCGCTTGAAGAGAGCGCCGCAGACATCACACTTCAGGCGCCGCTCCTC
GGTGTGCACGACCTTGTGCATGTTCCAGGTGCGACGCGTTTGCAGCTTCT
TGCCGCAAATGTTGCACACGAAACTGGGCTCCGCATGGATTTGGTAGTGG
GCCTTCAGCCGAGCCCGATTCTTAAAGCCCGCCTTGCAGACGGTGCACTC
GAAGGGACGGCTTTCCGTGTGAACCAGCTTGTGTTCATTTAGTGCTGTTA
TTGTCTTCAGTTGCTTGCCGCAACTATCGCAGATATATGGCTTGACATTC
TGGTGTATGCCCTCTTTGTGGAGCTTCAGCGCTGTGGCGGAGGATAGCGT
TTTGTTGCAAATATCACAGGTTGTTGTTGTTTTGTCCACTTTCACACGCC
GCTCGATCCGGCGGCACTCGCGTTCCAAGTGTTTCTCGTATGAAGCGCGG
TTTCTGTAGACCTTGCCACATTTCTCGCAGTCCATTCGACCCCGTTTGGC
CTTCTCCTCGGCAGTTGATTCCAGAGTATTTGGCGTGGTTGCCACAGCGA
CGAGATCCATTAGCTGGCCATCTACGGGCAGGAAATCGTCGTCTCCTTCA
CAGCTGTCAAGCATTTCTGATTTGACATCATTCTCCATTGAGGCCGGAGA
GGTTGTGCTGTCGAAGCGCGGTTGCGATAGTTCCTCCTGAGGCAGTTCGT

MXO02420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-PA 1542 CG17568-RA 608..1539 950..19 4635 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1839 CG17568-RA 707..1638 950..19 4645 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19180041..19180939 52..950 4480 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:45:00 has no hits.

MXO02420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:36 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 608..1542 18..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 608..1542 18..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:50 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 707..1644 10..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:08 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 707..1644 10..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19180042..19180939 53..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:50 Download gff for MXO02420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19180042..19180939 53..950 99   Plus

MXO02420.5prime Sequence

617 bp (449 high quality bases) assembled on 2006-12-21

> MXO02420.5prime
CAGTCGACATGACGGACGGCATCCACTGGTTGAACTGGTGTCGCCTGTGC
GCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAATGAGAATTC
TCATGGAAACTGGGACAATGTCCTGATAATGGCCATTCTCAAGTACTTCG
AAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGTGTACGGAG
TGCTATACGCTTATTACCAAACTAATCAATTTTGCAGAGCATGTGACCAA
AGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGATGGGGACC
AGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGTGCGATGAC
GACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATGGAGTCCGA
TAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCCTTTGGCGG
ATACAAGCAGCCAAGAAATGGAAATATCGAACAGGACAACAACAACCCAC
TTAATTCAAACCAAAAAGAACGTATAAATGGAGATACCCAAGCAAGAATT
CATCGACTTACGTCCCATTCTGTTGGAAAAGAACACAAGTCAACTGGACA
TGGAGGATGTGCTAGAC

MXO02420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-PA 1542 CG17568-RA 1..609 9..617 2795 98.3 Plus
CG10366-PA 1737 CG10366-RA 82..109 36..63 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1839 CG17568-RA 100..708 9..617 2895 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19180938..19181396 617..159 2190 98.5 Minus
2L 23513712 2L 19181454..19181603 158..9 705 98 Minus
Blast to na_te.dros performed on 2014-11-28 23:11:30 has no hits.

MXO02420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:38 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 1..609 9..617 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:24 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 1..609 9..617 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:04 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..708 9..617 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:41 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..708 9..617 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:41 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19180938..19181396 159..617 98 <- Minus
2L 19181454..19181603 9..158 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:04 Download gff for MXO02420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19180938..19181396 159..617 98 <- Minus
arm_2L 19181454..19181603 9..158 98   Minus