MXO02420.3prime Sequence
950 bp (799 high quality bases) assembled on 2006-12-21
> MXO02420.3prime
ATGGTCTAGAAAGCTTGCGTTTTCTGTTGTTCCTTTTGGTAACTTTTGAG
TCATAACGCGAAGTTCATCCAACGTTGGAACATTGAGGCGAGAGGGCAAC
CGTGCTCCATCCTCCTGCTGAACTTCCTGCGGATGTTTCTTGAGCTTGTG
CGACCGGCAATTGGCATTACAGGCAAAGGACTTGCCACAGTAGTTGCAAA
CGTACGGTCGCAGCCCCGTGTGGCTCAGCAAGTGGGTCTTGAGAGTCTTT
GAGCGCTTGAAGAGAGCGCCGCAGACATCACACTTCAGGCGCCGCTCCTC
GGTGTGCACGACCTTGTGCATGTTCCAGGTGCGACGCGTTTGCAGCTTCT
TGCCGCAAATGTTGCACACGAAACTGGGCTCCGCATGGATTTGGTAGTGG
GCCTTCAGCCGAGCCCGATTCTTAAAGCCCGCCTTGCAGACGGTGCACTC
GAAGGGACGGCTTTCCGTGTGAACCAGCTTGTGTTCATTTAGTGCTGTTA
TTGTCTTCAGTTGCTTGCCGCAACTATCGCAGATATATGGCTTGACATTC
TGGTGTATGCCCTCTTTGTGGAGCTTCAGCGCTGTGGCGGAGGATAGCGT
TTTGTTGCAAATATCACAGGTTGTTGTTGTTTTGTCCACTTTCACACGCC
GCTCGATCCGGCGGCACTCGCGTTCCAAGTGTTTCTCGTATGAAGCGCGG
TTTCTGTAGACCTTGCCACATTTCTCGCAGTCCATTCGACCCCGTTTGGC
CTTCTCCTCGGCAGTTGATTCCAGAGTATTTGGCGTGGTTGCCACAGCGA
CGAGATCCATTAGCTGGCCATCTACGGGCAGGAAATCGTCGTCTCCTTCA
CAGCTGTCAAGCATTTCTGATTTGACATCATTCTCCATTGAGGCCGGAGA
GGTTGTGCTGTCGAAGCGCGGTTGCGATAGTTCCTCCTGAGGCAGTTCGT
MXO02420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17568-PA | 1542 | CG17568-RA | 608..1539 | 950..19 | 4635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17568-RA | 1839 | CG17568-RA | 707..1638 | 950..19 | 4645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19180041..19180939 | 52..950 | 4480 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:00 has no hits.
MXO02420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:36 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-PA | 608..1542 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:23 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-PA | 608..1542 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:50 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-RA | 707..1644 | 10..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:08 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-RA | 707..1644 | 10..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19180042..19180939 | 53..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:50 Download gff for
MXO02420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19180042..19180939 | 53..950 | 99 | | Plus |
MXO02420.5prime Sequence
617 bp (449 high quality bases) assembled on 2006-12-21
> MXO02420.5prime
CAGTCGACATGACGGACGGCATCCACTGGTTGAACTGGTGTCGCCTGTGC
GCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAATGAGAATTC
TCATGGAAACTGGGACAATGTCCTGATAATGGCCATTCTCAAGTACTTCG
AAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGTGTACGGAG
TGCTATACGCTTATTACCAAACTAATCAATTTTGCAGAGCATGTGACCAA
AGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGATGGGGACC
AGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGTGCGATGAC
GACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATGGAGTCCGA
TAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCCTTTGGCGG
ATACAAGCAGCCAAGAAATGGAAATATCGAACAGGACAACAACAACCCAC
TTAATTCAAACCAAAAAGAACGTATAAATGGAGATACCCAAGCAAGAATT
CATCGACTTACGTCCCATTCTGTTGGAAAAGAACACAAGTCAACTGGACA
TGGAGGATGTGCTAGAC
MXO02420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17568-PA | 1542 | CG17568-RA | 1..609 | 9..617 | 2795 | 98.3 | Plus |
CG10366-PA | 1737 | CG10366-RA | 82..109 | 36..63 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17568-RA | 1839 | CG17568-RA | 100..708 | 9..617 | 2895 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19180938..19181396 | 617..159 | 2190 | 98.5 | Minus |
2L | 23513712 | 2L | 19181454..19181603 | 158..9 | 705 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:30 has no hits.
MXO02420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:38 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-PA | 1..609 | 9..617 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:24 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-PA | 1..609 | 9..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:04 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-RA | 100..708 | 9..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:41 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17568-RA | 100..708 | 9..617 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:41 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19180938..19181396 | 159..617 | 98 | <- | Minus |
2L | 19181454..19181603 | 9..158 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:04 Download gff for
MXO02420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19180938..19181396 | 159..617 | 98 | <- | Minus |
arm_2L | 19181454..19181603 | 9..158 | 98 | | Minus |