MXO02421.3prime Sequence
828 bp (766 high quality bases) assembled on 2006-12-21
> MXO02421.3prime
ATGGTCTAGAAAGCTTGCAGACAGATGGTAGAGGTCCTGTGGATGTTGCT
GGTAGCTGCACTGATGTTGGTACTGCTGCGGGTAGGCATCGTACTGCTGG
TGGGTCTGCTGCTGAGGGTAATCATTGAGCAGGCCATAACCATGACTGTG
ACTGTGGCTGTAAGCGGGGTAGGCGGCGGTGGTTTGGTGGTGGTGGTACA
TGGGCACTGGCACCGATGGTGCCCCGGTGGTGGCGGTGCTTGTGGCCTCC
AGTGGCGGCAGCATCGCGGTGTAGCCGGCACCACAGTGCTCCGGGGAGCT
GTCCAGCGTGCGATCCTTCTTCGACTTCATGCGTCGGTTTTGGAACCAGA
TCTTGATCTGCCTTTCGCTCAGGCTCAGGGCATTGGCGATATCGATGCGA
CGACGCCGGGTGATGTATCTATTGAAGTGGAACTCCTTCTCGAGCTCCAG
GGTCTGGTAGCGGGTGTACGTCTGACGGGTGCGTTTCGAGTCTTTGCAAT
CTGATGCCAAAGTCTCCTCGATGTGCGACCAATTGAAATCGCCGGCTCCA
TTCGGGGCTGTCACAATTCGATGATTGATCTCCTGGCTGACAGCTGACGA
GGATTTCTCCCCCGGCGATTGGGGTGGCGTGCTGATGCCTTCGAGGGGCG
GCAGAGAGGTGGGCGTGGTTGGCGGAGGGGTGGCAAAGTCGCCATTCTTC
AGCTTCTGCGTCTGCGACTGGGGCGAGTAGACGTCCAAGTAGTCGACATC
CTCGGAGGCGCTGGGCGTGGGCACAGTCACGTACTCTTGGTCGTAGCTGG
GAGCGGGGCTGGCGGTGACCTTGGTGCT
MXO02421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2047-PA | 1233 | ftz-RA | 421..1230 | 828..19 | 4050 | 100 | Minus |
| CG1030-PA | 1254 | Scr-RA | 991..1037 | 468..422 | 185 | 95.7 | Minus |
| CG1030-PB | 1254 | Scr-RB | 991..1037 | 468..422 | 185 | 95.7 | Minus |
| CG1030-PC | 1254 | Scr-RC | 991..1037 | 468..422 | 185 | 95.7 | Minus |
| CG1030-PA | 1254 | Scr-RA | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
| CG1030-PB | 1254 | Scr-RB | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
| CG1030-PC | 1254 | Scr-RC | 1097..1145 | 362..314 | 170 | 93.8 | Minus |
| CG2189-PA | 1761 | Dfd-RA | 1223..1271 | 362..314 | 145 | 91.8 | Minus |
| CG10388-PB | 1041 | Ubx-RB | 769..816 | 474..427 | 140 | 91.6 | Minus |
| CG10388-PF | 1068 | Ubx-RF | 796..843 | 474..427 | 140 | 91.6 | Minus |
| CG10388-PD | 1092 | Ubx-RD | 820..867 | 474..427 | 140 | 91.6 | Minus |
| CG10388-PC | 1119 | Ubx-RC | 847..894 | 474..427 | 140 | 91.6 | Minus |
| CG10388-PE | 1143 | Ubx-RE | 871..918 | 474..427 | 140 | 91.6 | Minus |
| CG10388-PA | 1170 | Ubx-RA | 898..945 | 474..427 | 140 | 91.6 | Minus |
| CG13424-PA | 1236 | CG13424-RA | 483..509 | 361..335 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-RA | 1774 | CG2047-RA | 491..1300 | 828..19 | 4050 | 100 | Minus |
| Scr-RB | 3987 | CG1030-RB | 1462..1616 | 468..314 | 400 | 83.9 | Minus |
| Scr-RA | 4140 | CG1030-RA | 1615..1769 | 468..314 | 400 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6865286..6865770 | 503..19 | 2425 | 100 | Minus |
| 3R | 32079331 | 3R | 6864814..6865141 | 828..501 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 6825491..6825645 | 314..468 | 400 | 83.9 | Plus |
| 3R | 32079331 | 3R | 6898361..6898521 | 314..474 | 340 | 80.7 | Plus |
| 3R | 32079331 | 3R | 16810163..16810323 | 314..474 | 340 | 80.7 | Plus |
| 3R | 32079331 | 3R | 6801029..6801183 | 468..314 | 220 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:12 has no hits.
MXO02421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:39 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-PA | 421..1233 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:25 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2047-PA | 421..1233 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:01 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 491..1300 | 19..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:33 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 491..1300 | 19..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:33 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6864814..6865141 | 501..828 | 100 | -> | Minus |
| 3R | 6865289..6865770 | 19..500 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:01 Download gff for
MXO02421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2690536..2690863 | 501..828 | 100 | -> | Minus |
| arm_3R | 2691011..2691492 | 19..500 | 100 | | Minus |
