MXO02422.3prime Sequence
856 bp (853 high quality bases) assembled on 2006-12-21
> MXO02422.3prime
ATGGTCTAGAAAGCTTGCCGTCCTGCGCCGTTTGCCCAGACTGAGATCGG
TGGCTCCGCCTTCCGGCTTGAGGCGTCGCTTGCTACTCCGTCCGCTGGCC
GATTTTACACCGGATACGGTGCCACTGATTCGCTGAGTCTCGGCCATGGC
CAGCGGAGCAGTGGTCAACGGCAGGGGTGGGCCGTTTAACGGATGCCCAA
GTGGGAGTGTAGACTCCAGGAGAAGCTCGCTTTTGACAACGGCTCCCGGG
GCAATCATCAGCAGGTCGTTGCCAGCGTTTCCGTTGGCATGTCCGTGCCC
AATGCCATTCCTGTGCATCTGCCCGTCGGTGCGTTCACACTTGATGTGCC
GTACAGGCGGAACATCTGGATTCTCCAGATTCTCCCCGTCCGCCGCATGG
CCATTGGCCATCCTATTGTCGTTGTTGTTCGGCTCCATTTGAGCCCTGAT
CGGATGCGAGGGCGCCTGCCGCTGCTGCCACTCGAGGATGCCCGTCAGCA
GCTTAATGTACTTAATGGCCGAGCGCAGGATCTCGTTCTTCGATAGCTTC
TTGTCCGGCGGATGTGTGGGCACCAGCTTGCGCAGCTCTGCAAAGGCACC
GGACACGTTCTGCTGGCGCCATCGCTCCCTTGTGTTGGTGAACACCTTGC
GCACACCGCCGGTGGCTCCTACGCCGCTGCCGCCGCCACTGGATGCATTG
CCGCCGGAGCCATTGCCTCCACCACCGCCGCTACCGCCGACTGAGCTTCC
GGAGCTGGCCGGCGCGGTCAGCAGTCCGTTGCGGGAGTGACTGCGCGGCG
AACTGGACAGTGAGCGATTCGCATCCGCCTGGTTGCCATTCAGAACGATG
TAATCG
MXO02422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2655-PA | 1131 | HLH3B-RA | 291..1128 | 856..19 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH3B-RA | 1428 | CG2655-RA | 356..1193 | 856..19 | 4190 | 100 | Minus |
| HLH4C-RB | 1424 | CG3052-RB | 563..632 | 596..527 | 230 | 88.6 | Minus |
| HLH4C-RA | 1424 | CG3052-RA | 563..632 | 596..527 | 230 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2680434..2681237 | 19..822 | 4020 | 100 | Plus |
| X | 23542271 | X | 4645919..4645988 | 527..596 | 230 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:46 has no hits.
MXO02422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:41 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-PA | 291..1131 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:25 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2655-PA | 291..1131 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:07 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 356..1193 | 19..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:30 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 356..1193 | 19..856 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:30 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2680434..2681236 | 19..821 | 100 | <- | Plus |
| X | 2681334..2681368 | 822..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:07 Download gff for
MXO02422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2574467..2575269 | 19..821 | 100 | <- | Plus |
| arm_X | 2575367..2575401 | 822..856 | 100 | | Plus |
MXO02422.5prime Sequence
854 bp (759 high quality bases) assembled on 2006-12-21
> MXO02422.5prime
CAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGGATAACGCG
GACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGCCAGACCAA
CGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCATGCGGGACA
CTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCACGCCCCAC
CTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGACGCGGAGCT
TTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGATCTTCGCG
ATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCTCACTGTCC
AGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCGCCGGCCAG
CTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAATGGCTCCG
GCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCACCGGCGGT
GTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAGCAGAACGT
GTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACATCCGCCGG
ACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTAAGTACATT
AAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCGCCCTCGCA
TCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAGGATGGCCA
ATGGCCATGCGGGGGACGGGGAGAATCTGGAGAATCCAGATGTTCCGCCT
GTACGGCACATCAGGTGGGAACGCCCCGACGGGCAAATGCACGGGAATGG
CATT
MXO02422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2655-PA | 1131 | HLH3B-RA | 1..846 | 9..854 | 4080 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH3B-RA | 1428 | CG2655-RA | 66..911 | 9..854 | 4140 | 99.3 | Plus |
| HLH4C-RB | 1424 | CG3052-RB | 563..632 | 559..628 | 230 | 88.6 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 563..632 | 559..628 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2680716..2681237 | 854..333 | 2520 | 98.9 | Minus |
| X | 23542271 | X | 2681334..2681658 | 333..9 | 1625 | 100 | Minus |
| X | 23542271 | X | 4645919..4645988 | 628..559 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:29 has no hits.
MXO02422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:43 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-PA | 1..846 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:25 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2655-PA | 1..846 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:57 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 59..911 | 1..854 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:02 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 59..911 | 1..854 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:02 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2680716..2681236 | 334..854 | 98 | <- | Minus |
| X | 2681334..2681665 | 1..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:57 Download gff for
MXO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2574749..2575269 | 334..854 | 98 | <- | Minus |
| arm_X | 2575367..2575698 | 1..333 | 98 | | Minus |
