Clone MXO02423 Report

Search the DGRC for MXO02423

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:23
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG30417-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02423.3prime Sequence

828 bp (791 high quality bases) assembled on 2006-12-21

> MXO02423.3prime
ATGGTCTAGAAAGCTTGCATTATATTTGGGCTTGGTGCGGGCCACTCTTT
TGCCGGTGAACCCCTTGCTGGCCAAATAATCACGGATGCCGCGTTTGGTG
TGCACCTTCAGTTTGCAGATGTCGAACTCCAGCTCCTTGTTGCAGTACTC
GGCGCCCTCCATGCGTTGAATGAAATGGATGACGTGGAGCAGCACCTCGC
CGTCCAGCTGCTGAATCTTGGCGTGCAGATCAAGGTCCTCCTCGGTTGTA
AAGGGCTCCTGCTGCTCCGAAGTTTCCAAAGTTGCCGGCGGAGTCCAATC
GGGGGTCGGAGTACATTCGGTGGTTGGAGTACATGAGGGGGGCGCACCCA
TTATGGAGGGGGACACCTCCGAGCCGTTCACCTCGTCCTCCGGCGATGAT
GAGTCCGATTCATCCGAGGAGCTCTCTTCCTCGGCACGCACTTTACTGCC
GCTGGAGCAGATGTAGAGCTGCACCTGGGAGTACATCTCCTCAAAGATGA
TCTGCAGCTGTTTGGCCATGTGGTAGCACAGGTGATCGGGATTCGTGTAC
AGATAGGTGTTGTAGAAAATCAGCCTTATGTCTTTGGCGAAATCCGCGGC
ACTGAGATAGCAACCCGTATTCAAACGATGCCTCACGGTGGACAGATCCA
TGGGTTCCCGGACAATCTCATGGTAATCGTGGAGGCCCAGCAGTTGCGGA
TCCAGTGGCTCGTAGAAAACCCAAGCAATATTCTTATAGGTACTGGAAAA
CAACCTTTTAATAATCACCTTGCAAGCATTAATTTCCGGCGAGGAACGTT
CAGTTTCTTGTTTTGCAGCCATGTCGAC

MXO02423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..804 822..19 3970 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..829 822..19 3990 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326753..23327556 19..822 3990 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:11 has no hits.

MXO02423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:44 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:26 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:23 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 19..837 9..828 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:21 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 19..837 9..828 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:21 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326745..23327560 9..828 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:23 Download gff for MXO02423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214268..19215083 9..828 98   Plus

MXO02423.5prime Sequence

828 bp (755 high quality bases) assembled on 2006-12-21

> MXO02423.5prime
CAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGCCGGAAATT
AATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACCTATAAGAA
TATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCTGGGCCTCC
ACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCACCGTGAGG
CATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTCGCCAAAGA
CATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCCCGATCACC
TGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGGAGATGTAC
TCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTGCGTGCCGA
GGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGAGGACGAGG
TGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCCCCTCATGT
ACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCGCCGGCAAC
TTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGAGGACCTTG
ATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGCTCCACGTC
ATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAACAAGGAGCT
GGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGGCATCCGTG
ATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCCGCACCAAG
CCCAAATATAATGCAAGCTTTCTAGACC

MXO02423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..804 9..812 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..829 9..812 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326753..23327556 812..9 4020 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:08:41 has no hits.

MXO02423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:46 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 9..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:26 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 9..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:18 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 21..837 1..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:58 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 21..837 1..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:58 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326745..23327561 1..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:18 Download gff for MXO02423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214268..19215084 1..822 99   Minus