MXO02425.3prime Sequence
441 bp (441 high quality bases) assembled on 2006-12-21
> MXO02425.3prime
ATGGTCTAGAAAGCTTGCGTATTGTAAGCTGCGTTTAGTGCCGATATCGT
CGAGTATTTGGCGCAGCTCCTCATCCTCGAAGCGACCCTCTAGTGAAGGA
ATCAGCGCCTTGGCCTCCTCGGGCGCCTCCGGACACAAATTACCCAGTGC
GGCCAGTTCGAATTTGTGCAGCTTTTTCTGCATCAGCAAGCTTCGCGCAG
ACATTATCGTCTCCTTGTTTTTGAACTTTCGAAAACTATCTGTGTAGGCG
TAGGTCTTCATGAAGACCTCGGAGAACTCTTGCTCCTCGTCGGCGGATTC
GTTTTGTCGCTTTCGGTGATCGAGAAGCATGTGCACCTCCGATATCAGCA
GCGTCTCGGCATTTTCGAACTCTTTGGGAAACTGCAGGTCGGCGGCGTCC
TCATCCACCATATCCACGGGGTTCATAAAAGACATGTCGAC
MXO02425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..450 | 373..19 | 1675 | 98.8 | Minus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 435..371 | 325 | 100 | Minus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 435..372 | 320 | 100 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 435..372 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 435..19 | 2025 | 99 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 373..19 | 1715 | 98.9 | Minus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 373..19 | 1715 | 98.9 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 435..372 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 191..373 | 870 | 98.4 | Plus |
| 3R | 32079331 | 3R | 18253041..18253214 | 19..192 | 855 | 99.4 | Plus |
| 3R | 32079331 | 3R | 18255317..18255380 | 372..435 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:50 has no hits.
MXO02425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:50 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 373..435 | 100 | | Minus |
| CG33520-PD | 98..453 | 15..372 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:27 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 98..453 | 15..372 | 98 | | Minus |
| CG33520-PD | 1..63 | 373..435 | 100 | -> | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:01 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 101..529 | 11..441 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:13 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 101..529 | 11..441 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:13 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253036..18253212 | 11..190 | 97 | <- | Plus |
| 3R | 18253275..18253455 | 191..371 | 98 | <- | Plus |
| 3R | 18255317..18255385 | 372..441 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:01 Download gff for
MXO02425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078758..14078934 | 11..190 | 97 | <- | Plus |
| arm_3R | 14078997..14079177 | 191..371 | 98 | <- | Plus |
| arm_3R | 14081039..14081107 | 372..441 | 95 | | Plus |
MXO02425.5prime Sequence
441 bp (441 high quality bases) assembled on 2006-12-21
> MXO02425.5prime
CAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATGAGGACGCC
GCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACGCTGCTGAT
ATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAACGAATCCG
CCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCTACGCCTAC
ACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATGTCTGCGCG
AAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGCCGCACTGG
GTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGATTCCTTCA
CTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTCGACGATAT
CGGCACTAAACGCAGCTTACAATACGCAAGCTTTCTAGACC
MXO02425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..450 | 71..425 | 1675 | 98.8 | Plus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 9..73 | 325 | 100 | Plus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 9..72 | 320 | 100 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 9..72 | 320 | 100 | Plus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 9..72 | 320 | 100 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 9..72 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..524 | 9..425 | 2025 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 71..425 | 1715 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 71..425 | 1715 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 9..72 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253275..18253457 | 253..71 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18253041..18253214 | 425..252 | 855 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:29 has no hits.
MXO02425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:52 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 98..453 | 72..429 | 98 | | Plus |
| CG33520-PD | 1..63 | 9..71 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:27 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 98..453 | 72..429 | 98 | | Plus |
| CG33520-PD | 1..63 | 9..71 | 100 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:05 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 99..529 | 1..433 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:55 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 99..529 | 1..433 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:55 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253036..18253212 | 254..433 | 97 | <- | Minus |
| 3R | 18253275..18253455 | 73..253 | 98 | <- | Minus |
| 3R | 18255317..18255386 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:05 Download gff for
MXO02425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078758..14078934 | 254..433 | 97 | <- | Minus |
| arm_3R | 14078997..14079177 | 73..253 | 98 | <- | Minus |
| arm_3R | 14081039..14081108 | 1..72 | 94 | | Minus |
