Clone MXO02426 Report

Search the DGRC for MXO02426

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:26
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02426.3prime Sequence

876 bp (818 high quality bases) assembled on 2006-12-21

> MXO02426.3prime
ATGGTCTAGAAAGCTTGCCTCATCTTCTCCCACTGAACCCTTTATGATTC
CTTTACCATAATAAGCAGTGAGCGCAACCATTCGGGTGTCCAGATAGTTG
TGCTCCACCTCGCACTGCTGCCCAACTCCACTTAGAGCGACCACCTGCTT
CATATTGGCGTTGCGTGGCAGAAAGAAAGCTACGTCAGATGCCAGGCTAC
GGGACAGCTGCATCAGTTGGCTAGCACCCACGGGCAGGAGACCTGTTTCG
ATATCAAAGGTGGCCTGCTTTTGGTAGTCAGGACCACCCCACGGAGGGCT
CAGGAAAACCACATTTGGGCGCAGCTTTGTGCTGGCCGCAAACTGCAGAA
AATCGGCGTGGATAAACTCGATCTTATGGGCCACACCATAAATGCCGGCA
TTATGCTTGGCCATGGCCAACTTCTCGGCATCGATGTCCACAGCAATTAC
GCGTCCACAGGTGTTTGCAAACTGAATGGCATTGCCGCCGCATCCACAGA
AAGCATCTACGATCACGTCGCAGGCCAGTCGTCGGGCCGTTTGTTTGGCA
ATCTTCTCGGGTGTCACCGAGAACCAGCTCTCGCGGTCCAGCCGAATGCC
CTGATCGAAGCGGGAGAACAGCGAGAATCGCTTGACCCAGTACTTGACCA
TTTTGTTGTTATCCTCTTGCATGCACTCTGGCATCCTGGCCTTGAGTTTT
TTTATTTGCCTTTGCCGTCGTTTTTTCTTTTTAACAGAACCGCTCTGAAC
GCCGTGCAGAGCCTCGTTTTCGTTGTTCTCCATGGTCAACAGATCATGAT
CGTCCTCGCTATCGCTGCTAGATAGTTCGTACTGTGTCTTTCTTTCCTTT
CTATAATAATTATATCTGCCTTCGAC

MXO02426.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31241-PA 1476 CG31241-RA 635..1473 857..19 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Tgs1-RB 2089 CG44890-RB 1159..2017 876..19 4270 99.9 Minus
moi-RA 2089 CG42350-RA 1159..2017 876..19 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18256747..18257605 876..19 4245 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:00:37 has no hits.

MXO02426.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:54 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31241-PA 615..1476 18..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:29 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31241-PA 615..1476 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:36 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
Tgs1-RB 1159..2024 11..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:02 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
moi-RA 1159..2024 11..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:02 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18256747..18257609 14..876 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:36 Download gff for MXO02426.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14082469..14083331 14..876 99 -> Minus

MXO02426.5prime Sequence

771 bp (765 high quality bases) assembled on 2006-12-21

> MXO02426.5prime
CAGTCGACATGGTACATCCAGGTCATCGACAGAGCCGAGGACTTGCTGAC
TCGCAGGCTGGAGATGAGAAGTCTGATCGAGAAATGAACACACACCACCT
GACCACCTCGCGAACCAATCCGCAGTTCTATATATTCAGTCAGCTCTTTG
GTAACGATTTCGACTGGAATAATTGCAATTGGGGGGGCATTCAAAACGTT
ACCTGGAAAGAATTCTGGCAGCGTGAGGGGCATGAGCTGCTCGAGCAAAA
GTGGCACAAGCGGTTTCCCGAATACAAAGATCTTATCGAGGTGGTTTCGT
CGGAGGAGCAAGGCCTTTGGCAGGAACTGTGGGAGAAGCACGCCAGCGAT
TACAGTGAAAAGTTCTGGTATATATTTAGCTGTGCCTTTGAGAACTACCA
ACACGATTTGGCCAAATCATTTGGCCTTGACGTCGCTGAAAACTCAGAAG
ATGTTGAGGAGGACTTGCAGAACCTAAGCCTTACAAATAAGCCAATAAAA
TCGAAACAGCAAAGGGTCACAGAGAAAGAGGAGGACGAATCATACTTGAC
TGCCAACGACGATCCCGAGGATTGTGACGAGGAACAACAGCTGCGCCTTC
TCGGATTGCCAACATCATTTGCGTCGAAGGCAGATATAATTAATTATAGA
AAGGAAAGAAAGACACAGTACGAACTATCTAGCAGCGATAGCGAGGACGA
TCATGATCTGTTGACCATGGAGAACAACGAANACGAGGCTCTGCACGGCG
TTCAGAGCGGTTCTGTTAAAA

MXO02426.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31241-PA 1476 CG31241-RA 1..763 9..771 3796 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tgs1-RB 2089 CG44890-RB 545..1307 9..771 3804 99.9 Plus
moi-RA 2089 CG42350-RA 545..1307 9..771 3804 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18256133..18256895 9..771 3804 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:59:56 has no hits.

MXO02426.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:55 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31241-PA 1..759 9..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:29 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31241-PA 1..759 9..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:09 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
Tgs1-RB 536..1303 1..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:39 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
moi-RA 536..1303 1..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:39 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18256124..18256891 1..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:09 Download gff for MXO02426.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14081846..14082613 1..767 99   Plus