Clone MXO02427 Report

Search the DGRC for MXO02427

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:27
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptdebcl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02427.3prime Sequence

832 bp (831 high quality bases) assembled on 2006-12-21

> MXO02427.3prime
ATGGTCTAGAAAGCTTGCGAACAGCAGCGAATACAGTTGACCTCCAATGC
GCCGACACACGTTTGAGACCATATATGCGCCTGCAGAGATAGTCACGAAC
AGCGTCAACCATCCCAAGAACGTAAATTCGCCGACCCGGGGTCGGATGTG
CCGCGACAGGCCCAACCATCCGCCGTTGTCGATCAGCCAGTAGACCAGGT
CGTCCTCTATGATCTCAGCCAGACCGTCAATCAGGCACTGTAGGTAGTCG
AAATGTCCCTGGCGCACGCAGTCTATGGCAAAGCCGCCGCATACGGCAAA
TATCGAGATTATCTTGCCCCAGGTGATGCTGGAGCGAAAAAGATCCTTGG
CAACTAGGTTGAGCAACATGGGCGCCATGTCGCTGTCCTCCAGCTCGCCA
AACGGGGCCCTCGACAGCTGTCGCGATATGTTTGTGTACACCCGCGGGTG
CATCCGCTCCAGTTCCTCGCCCATGCTGTTCAGTGCCGGGAAAACTTCAT
AGACCACGTGCGAGGAGCCGGGGTCCAGGATGTTGCGCAAACGCTGTGTC
ACCTTCCGGTTGAGGACTCCTGCCCGTCGCAGCCGCGCTCTGATGTACTG
ACCACACAGACATTTCCCCTGGTTGATGATATCCATTTTGTACTCCTGGT
AGTTAGTCATCGTGCGCGTACTGCTAGCCAGCGAGGATGTGGAGGCGGCC
CGTGTCATGGGTCCGCCGGCGTGAAGGGAGCGTCCGTTAGAGGGATTGGG
TACGCTACCGGGTCCTCCTGCTCCTCCACCGACGCCTCCGCGGAGCGCCT
TCCAGTCGCTGGAGGCCGTTGCAATGGTGCCG

MXO02427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33134-PA 903 debcl-RA 87..900 832..19 4045 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Debcl-RA 1724 CG33134-RA 712..1525 832..19 4055 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6652188..6652643 474..19 2280 100 Minus
2R 25286936 2R 6649365..6649579 832..618 1060 99.5 Minus
2R 25286936 2R 6651985..6652132 622..475 740 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:00:52 has no hits.

MXO02427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:57 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
debcl-PA 87..903 18..832 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:30 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33134-PA 87..903 18..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:44 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
debcl-RA 712..1531 11..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:10 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
Debcl-RA 712..1531 11..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:10 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6649365..6649578 619..832 99 -> Minus
2R 6651989..6652132 475..618 100 -> Minus
2R 6652188..6652649 11..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:44 Download gff for MXO02427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2536870..2537083 619..832 99 -> Minus
arm_2R 2539494..2539637 475..618 100 -> Minus
arm_2R 2539693..2540154 11..474 99   Minus

MXO02427.5prime Sequence

878 bp (811 high quality bases) assembled on 2006-12-21

> MXO02427.5prime
CAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGGCCAAGTTC
AAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGCCGCGGCAC
CATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGGCGTCGGTG
GAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACGGACGCTCC
CTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCCTCGCTGGC
TAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAATGGATATCA
TCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGCGGCTGCGA
CGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGCAACATCCT
GGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGCACTGAACA
GCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACACAAACATA
TCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGACAGCGACAT
GGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCGCTCCAGCA
TCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCGGCTTTGCC
ATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGCCTGATTGA
CGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCTGATCGACA
ACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGGTCGGCGAA
TTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCTGCAGGCGC
ATATATGGTCTCAAACGTGTGTCGGCGC

MXO02427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33134-PA 903 debcl-RA 1..870 9..878 4300 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Debcl-RA 1724 CG33134-RA 625..1495 8..878 4325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6652188..6652613 453..878 2130 100 Plus
2R 25286936 2R 6649278..6649579 8..309 1480 99.3 Plus
2R 25286936 2R 6651985..6652132 305..452 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:24:41 has no hits.

MXO02427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:59 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
debcl-PA 1..870 9..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:30 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33134-PA 1..870 9..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:15 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
debcl-RA 618..1495 1..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:03 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
Debcl-RA 618..1495 1..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:03 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6649271..6649578 1..308 98 -> Plus
2R 6651989..6652132 309..452 100 -> Plus
2R 6652188..6652613 453..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:15 Download gff for MXO02427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2536776..2537083 1..308 98 -> Plus
arm_2R 2539494..2539637 309..452 100 -> Plus
arm_2R 2539693..2540118 453..878 100   Plus