Clone Sequence Records
MXO02427.3prime Sequence
832 bp (831 high quality bases) assembled on 2006-12-21
> MXO02427.3prime
ATGGTCTAGAAAGCTTGCGAACAGCAGCGAATACAGTTGACCTCCAATGC
GCCGACACACGTTTGAGACCATATATGCGCCTGCAGAGATAGTCACGAAC
AGCGTCAACCATCCCAAGAACGTAAATTCGCCGACCCGGGGTCGGATGTG
CCGCGACAGGCCCAACCATCCGCCGTTGTCGATCAGCCAGTAGACCAGGT
CGTCCTCTATGATCTCAGCCAGACCGTCAATCAGGCACTGTAGGTAGTCG
AAATGTCCCTGGCGCACGCAGTCTATGGCAAAGCCGCCGCATACGGCAAA
TATCGAGATTATCTTGCCCCAGGTGATGCTGGAGCGAAAAAGATCCTTGG
CAACTAGGTTGAGCAACATGGGCGCCATGTCGCTGTCCTCCAGCTCGCCA
AACGGGGCCCTCGACAGCTGTCGCGATATGTTTGTGTACACCCGCGGGTG
CATCCGCTCCAGTTCCTCGCCCATGCTGTTCAGTGCCGGGAAAACTTCAT
AGACCACGTGCGAGGAGCCGGGGTCCAGGATGTTGCGCAAACGCTGTGTC
ACCTTCCGGTTGAGGACTCCTGCCCGTCGCAGCCGCGCTCTGATGTACTG
ACCACACAGACATTTCCCCTGGTTGATGATATCCATTTTGTACTCCTGGT
AGTTAGTCATCGTGCGCGTACTGCTAGCCAGCGAGGATGTGGAGGCGGCC
CGTGTCATGGGTCCGCCGGCGTGAAGGGAGCGTCCGTTAGAGGGATTGGG
TACGCTACCGGGTCCTCCTGCTCCTCCACCGACGCCTCCGCGGAGCGCCT
TCCAGTCGCTGGAGGCCGTTGCAATGGTGCCG
MXO02427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33134-PA | 903 | debcl-RA | 87..900 | 832..19 | 4045 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 1724 | CG33134-RA | 712..1525 | 832..19 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6652188..6652643 | 474..19 | 2280 | 100 | Minus |
2R | 25286936 | 2R | 6649365..6649579 | 832..618 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 6651985..6652132 | 622..475 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:52 has no hits.
MXO02427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:57 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-PA | 87..903 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:30 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33134-PA | 87..903 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:44 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 712..1531 | 11..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:10 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Debcl-RA | 712..1531 | 11..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:10 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6649365..6649578 | 619..832 | 99 | -> | Minus |
2R | 6651989..6652132 | 475..618 | 100 | -> | Minus |
2R | 6652188..6652649 | 11..474 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:44 Download gff for
MXO02427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2536870..2537083 | 619..832 | 99 | -> | Minus |
arm_2R | 2539494..2539637 | 475..618 | 100 | -> | Minus |
arm_2R | 2539693..2540154 | 11..474 | 99 | | Minus |
MXO02427.5prime Sequence
878 bp (811 high quality bases) assembled on 2006-12-21
> MXO02427.5prime
CAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGGCCAAGTTC
AAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGCCGCGGCAC
CATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGGCGTCGGTG
GAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACGGACGCTCC
CTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCCTCGCTGGC
TAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAATGGATATCA
TCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGCGGCTGCGA
CGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGCAACATCCT
GGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGCACTGAACA
GCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACACAAACATA
TCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGACAGCGACAT
GGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCGCTCCAGCA
TCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCGGCTTTGCC
ATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGCCTGATTGA
CGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCTGATCGACA
ACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGGTCGGCGAA
TTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCTGCAGGCGC
ATATATGGTCTCAAACGTGTGTCGGCGC
MXO02427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33134-PA | 903 | debcl-RA | 1..870 | 9..878 | 4300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Debcl-RA | 1724 | CG33134-RA | 625..1495 | 8..878 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6652188..6652613 | 453..878 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 6649278..6649579 | 8..309 | 1480 | 99.3 | Plus |
2R | 25286936 | 2R | 6651985..6652132 | 305..452 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:41 has no hits.
MXO02427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:26:59 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-PA | 1..870 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:30 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33134-PA | 1..870 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:15 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
debcl-RA | 618..1495 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:03 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Debcl-RA | 618..1495 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:03 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6649271..6649578 | 1..308 | 98 | -> | Plus |
2R | 6651989..6652132 | 309..452 | 100 | -> | Plus |
2R | 6652188..6652613 | 453..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:15 Download gff for
MXO02427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2536776..2537083 | 1..308 | 98 | -> | Plus |
arm_2R | 2539494..2539637 | 309..452 | 100 | -> | Plus |
arm_2R | 2539693..2540118 | 453..878 | 100 | | Plus |