MXO02428.3prime Sequence
884 bp (729 high quality bases) assembled on 2006-12-21
> MXO02428.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGCCCTTGGTGACCACGGAGACGGGTG
TGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGCC
GTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCGC
TGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTCT
CGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGAG
AGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCGC
CGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGGC
CCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGGC
GCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGATT
AAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATCG
AGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGGA
AACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGATT
CATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCACA
CCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCTT
GTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGATG
CAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGCC
TCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAGGACAGCTCG
TCGTCGTTATCCACGTCCAGGCCGCCGTCCGTAT
MXO02428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 362..1227 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 684..1549 | 884..19 | 4330 | 100 | Minus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 718..617 | 225 | 82.5 | Minus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 725..617 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20954917..20955463 | 19..565 | 2735 | 100 | Plus |
2R | 25286936 | 2R | 20958258..20958391 | 650..783 | 670 | 100 | Plus |
2R | 25286936 | 2R | 20958539..20958641 | 782..884 | 515 | 100 | Plus |
2R | 25286936 | 2R | 20955686..20955780 | 562..656 | 475 | 100 | Plus |
3R | 32079331 | 3R | 18237892..18237993 | 718..617 | 225 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:06 has no hits.
MXO02428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:00 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 362..1230 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:31 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 362..1230 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:53 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 684..1561 | 9..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:37 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 684..1561 | 9..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:37 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20954905..20955461 | 9..563 | 99 | <- | Plus |
2R | 20955688..20955775 | 564..651 | 100 | <- | Plus |
2R | 20958260..20958389 | 652..781 | 100 | <- | Plus |
2R | 20958539..20958641 | 782..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:53 Download gff for
MXO02428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16846044..16846146 | 782..884 | 100 | | Plus |
arm_2R | 16842410..16842966 | 9..563 | 99 | <- | Plus |
arm_2R | 16843193..16843280 | 564..651 | 100 | <- | Plus |
arm_2R | 16845765..16845894 | 652..781 | 100 | <- | Plus |
MXO02428.5prime Sequence
871 bp (835 high quality bases) assembled on 2006-12-21
> MXO02428.5prime
CAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGCACCATCCA
ATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGTCCTGTCTC
ACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAATCAGCACC
AGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGCATCCCCAC
CACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAATAGCAACGG
CAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCAACAGCAAC
ACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTCAGGCCAAA
CGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTGGATAACGA
CGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAGCGATATGG
AGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAACATTTCAA
TTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCCGATGTTTT
CACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGCACGCGTGC
AGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTGAGAAGTTT
ATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGTCTGCCGGA
GTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGGTCATCCGG
GCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCCACCAGCAC
TTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAGCACCTGAT
GGCGCCCCACTACAAGCTGCC
MXO02428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 1..863 | 9..871 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 323..1185 | 9..871 | 4315 | 100 | Plus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 536..637 | 225 | 82.5 | Plus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 529..637 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20958539..20958846 | 472..165 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 20955281..20955463 | 871..689 | 915 | 100 | Minus |
2R | 25286936 | 2R | 20960431..20960587 | 165..9 | 785 | 100 | Minus |
2R | 25286936 | 2R | 20958258..20958391 | 604..471 | 670 | 100 | Minus |
2R | 25286936 | 2R | 20955686..20955780 | 692..598 | 475 | 100 | Minus |
3R | 32079331 | 3R | 18237892..18237993 | 536..637 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:17 has no hits.
MXO02428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:02 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 1..863 | 9..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:31 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 1..863 | 9..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:50 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1185 | 3..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:15 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1185 | 3..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:15 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20960431..20960595 | 3..165 | 98 | | Minus |
2R | 20955281..20955461 | 691..871 | 100 | <- | Minus |
2R | 20955688..20955775 | 603..690 | 100 | <- | Minus |
2R | 20958260..20958389 | 473..602 | 100 | <- | Minus |
2R | 20958539..20958845 | 166..472 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:50 Download gff for
MXO02428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16847936..16848100 | 3..165 | 98 | | Minus |
arm_2R | 16842786..16842966 | 691..871 | 100 | <- | Minus |
arm_2R | 16843193..16843280 | 603..690 | 100 | <- | Minus |
arm_2R | 16845765..16845894 | 473..602 | 100 | <- | Minus |
arm_2R | 16846044..16846350 | 166..472 | 100 | <- | Minus |