Clone MXO02428 Report

Search the DGRC for MXO02428

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:28
Vector:pMK33-CTAP-BD
Associated Gene/Transcripthbn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02428.3prime Sequence

884 bp (729 high quality bases) assembled on 2006-12-21

> MXO02428.3prime
ATGGTCTAGAAAGCTTGCGTCCTCGCCCTTGGTGACCACGGAGACGGGTG
TGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGCC
GTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCGC
TGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTCT
CGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGAG
AGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCGC
CGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGGC
CCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGGC
GCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGATT
AAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATCG
AGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGGA
AACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGATT
CATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCACA
CCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCTT
GTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGATG
CAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGCC
TCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAGGACAGCTCG
TCGTCGTTATCCACGTCCAGGCCGCCGTCCGTAT

MXO02428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 362..1227 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 684..1549 884..19 4330 100 Minus
repo-RA 2996 CG31240-RA 1286..1387 718..617 225 82.5 Minus
CG34340-RF 2989 CG34340-RF 807..915 725..617 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20954917..20955463 19..565 2735 100 Plus
2R 25286936 2R 20958258..20958391 650..783 670 100 Plus
2R 25286936 2R 20958539..20958641 782..884 515 100 Plus
2R 25286936 2R 20955686..20955780 562..656 475 100 Plus
3R 32079331 3R 18237892..18237993 718..617 225 81.4 Minus
Blast to na_te.dros performed on 2014-11-28 21:08:06 has no hits.

MXO02428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:00 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 362..1230 16..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:31 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 362..1230 16..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:53 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 684..1561 9..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:37 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 684..1561 9..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:37 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20954905..20955461 9..563 99 <- Plus
2R 20955688..20955775 564..651 100 <- Plus
2R 20958260..20958389 652..781 100 <- Plus
2R 20958539..20958641 782..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:53 Download gff for MXO02428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16846044..16846146 782..884 100   Plus
arm_2R 16842410..16842966 9..563 99 <- Plus
arm_2R 16843193..16843280 564..651 100 <- Plus
arm_2R 16845765..16845894 652..781 100 <- Plus

MXO02428.5prime Sequence

871 bp (835 high quality bases) assembled on 2006-12-21

> MXO02428.5prime
CAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGCACCATCCA
ATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGTCCTGTCTC
ACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAATCAGCACC
AGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGCATCCCCAC
CACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAATAGCAACGG
CAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCAACAGCAAC
ACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTCAGGCCAAA
CGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTGGATAACGA
CGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAGCGATATGG
AGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAACATTTCAA
TTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCCGATGTTTT
CACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGCACGCGTGC
AGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTGAGAAGTTT
ATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGTCTGCCGGA
GTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGGTCATCCGG
GCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCCACCAGCAC
TTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAGCACCTGAT
GGCGCCCCACTACAAGCTGCC

MXO02428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 1..863 9..871 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 323..1185 9..871 4315 100 Plus
repo-RA 2996 CG31240-RA 1286..1387 536..637 225 82.5 Plus
CG34340-RF 2989 CG34340-RF 807..915 529..637 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20958539..20958846 472..165 1540 100 Minus
2R 25286936 2R 20955281..20955463 871..689 915 100 Minus
2R 25286936 2R 20960431..20960587 165..9 785 100 Minus
2R 25286936 2R 20958258..20958391 604..471 670 100 Minus
2R 25286936 2R 20955686..20955780 692..598 475 100 Minus
3R 32079331 3R 18237892..18237993 536..637 225 81.4 Plus
Blast to na_te.dros performed on 2014-11-28 19:38:17 has no hits.

MXO02428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:02 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 1..863 9..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:31 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 1..863 9..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:50 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1185 3..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:15 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1185 3..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:15 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20960431..20960595 3..165 98   Minus
2R 20955281..20955461 691..871 100 <- Minus
2R 20955688..20955775 603..690 100 <- Minus
2R 20958260..20958389 473..602 100 <- Minus
2R 20958539..20958845 166..472 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:50 Download gff for MXO02428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16847936..16848100 3..165 98   Minus
arm_2R 16842786..16842966 691..871 100 <- Minus
arm_2R 16843193..16843280 603..690 100 <- Minus
arm_2R 16845765..16845894 473..602 100 <- Minus
arm_2R 16846044..16846350 166..472 100 <- Minus