Clone MXO02430 Report

Search the DGRC for MXO02430

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:30
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02430.3prime Sequence

371 bp (221 high quality bases) assembled on 2006-12-21

> MXO02430.3prime
ATGGTCTAGAAAGCTTGCAACTCTAAAGTATGGATAGGTTGGTGCAGTGG
TCATCATTGAGCTCTTCTGATCAACCTGATGATGGTAGCCGCTAATATGG
TTGCCTGCGGCAGAAGCGGGAGGGAAAAAGGAACCCGCAAAGTTGTAGCT
GTCCCACGTGGAGGGGTGGTGAGAGCCCGAAGCGGCGGCACATGCAAACT
GGGATCTCAGCTGCTCCGAGGATGTAGCAAGAGTCTGCGGCATCGAATAG
GCAACCCAGGCGAAACTAGCGTTGCTCGATCCCACTCCCCAGGTGCAGGT
CATGAACCCTCTTATAGGTCCTGTTTTTTGTGCTCGCACCTAGACGATCC
GGGTCCTTGGCCACCTGACCA

MXO02430.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3388-PA 1284 gsb-RA 1047..1275 253..25 1045 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 1161..1459 323..25 1165 92.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25064155..25064453 323..25 1165 92.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:39:14 has no hits.

MXO02430.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:05 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1005..1284 16..295 93   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:32 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1005..1284 16..295 93   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:27 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 1189..1464 19..295 93   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:46 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 1189..1464 19..295 93   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:46 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25064183..25064458 19..295 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:27 Download gff for MXO02430.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20951706..20951981 19..295 93   Minus

MXO02430.5prime Sequence

867 bp (748 high quality bases) assembled on 2006-12-21

> MXO02430.5prime
CAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACTTTGGCGGA
TATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGCGTCTTCAT
CAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGTGGAGATGG
CAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGCGCGTCTCT
CATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACTGGCTCCAT
TCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCACGCCAGACA
TTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTATTTTTAGT
TGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGACAAGCAAAA
TGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATCCTCCGGAT
CAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCGCTGGTTCT
GTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGTGTGCAGTT
AAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGACCAGATCG
ACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATGTCTACACC
CGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGTGTCCAAGT
TTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAACACCCAGC
AGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAACTCCCACT
ACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTACAGTTCACA
GAGCTGGCCATCATCCG

MXO02430.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3388-PA 1284 gsb-RA 1..859 9..867 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 185..1043 9..867 4295 100 Plus
gsb-n-RA 2237 CG2692-RA 369..589 51..271 460 81.6 Plus
prd-RB 2459 CG6716-RB 401..633 87..319 415 78.5 Plus
gsb-n-RA 2237 CG2692-RA 876..1042 570..736 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25063228..25064037 58..867 4035 99.9 Plus
2L 23513712 2L 12084821..12085053 319..87 415 78.5 Minus
2R 25286936 2R 25051416..25051625 271..62 405 79.5 Minus
2R 25286936 2R 25062148..25062203 9..64 280 100 Plus
2R 25286936 2R 25041692..25041858 736..570 220 75.4 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:07 has no hits.

MXO02430.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:07 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1..859 9..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:32 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1..859 9..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:53 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 178..1043 1..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:11 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 178..1043 1..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:11 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25062141..25062202 1..63 93 -> Plus
2R 25063234..25064037 64..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:53 Download gff for MXO02430.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20949664..20949725 1..63 93 -> Plus
arm_2R 20950757..20951560 64..867 100   Plus