MXO02431.3prime Sequence
185 bp (179 high quality bases) assembled on 2006-12-21
> MXO02431.3prime
ATGGTCTAGAAAGCTTGCCCCGTCGTCCTGCCAGAGTGATATATAGTCGA
GGATGTCCTCATCTTCAGTACCAGAACTGCAGGAATTGTTACGGTAGTCT
TCAAAACTGGCTTCCAACTTGGTATGAAAATTGTTAGGAGGTGTTGCTCC
CGGAATCGTCGATGTTGCTGGGTTGCAATAAGAGC
MXO02431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3796-PA | 606 | ac-RA | 437..600 | 185..22 | 795 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 917 | CG3796-RA | 500..663 | 185..22 | 805 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 370530..370693 | 185..22 | 805 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:29:32 has no hits.
MXO02431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:08 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:33 Download gff for
MXO02431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3796-PA | 437..606 | 15..185 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:38 Download gff for
MXO02431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 500..669 | 15..185 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:22 Download gff for
MXO02431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 500..669 | 15..185 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:22 Download gff for
MXO02431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 370530..370699 | 15..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:38 Download gff for
MXO02431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 264563..264732 | 15..185 | 97 | | Minus |
MXO02431.5prime Sequence
627 bp (608 high quality bases) assembled on 2006-12-21
> MXO02431.5prime
CAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCAACGACGAC
GAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGGAGAAATGC
CCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAGCCAACTAC
GACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATGGTCGCCGG
GGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGCACACTGAA
AATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCATGAAAACG
ACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATTTGCACTTT
CGGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAAGAGTTGCA
GTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCATTAGCTCTT
ATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTCCTAACAAT
TTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAACAATTCCTG
CAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATCACTCTGGC
AGGACGACCTGACAAGCTTTCTAGACC
MXO02431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3796-PA | 606 | ac-RA | 1..603 | 9..611 | 2990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 917 | CG3796-RA | 64..666 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 370094..370696 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2955 | 291..490 | 227 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6925 | 278..492 | 210 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6646..6917 | 224..490 | 203 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6946 | 233..471 | 200 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2552 | 279..501 | 196 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6920 | 278..469 | 196 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2481 | 293..472 | 178 | 58.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1134 | 298..373 | 173 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6851 | 316..446 | 171 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2524 | 278..441 | 165 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6997 | 278..471 | 165 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2267..2439 | 295..472 | 157 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2557 | 279..455 | 155 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6875 | 351..490 | 155 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6873 | 278..373 | 149 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6855..6923 | 301..369 | 147 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2791..2972 | 301..486 | 146 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2524 | 295..373 | 143 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1579 | 306..373 | 137 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2796 | 301..490 | 136 | 58.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1146 | 291..373 | 136 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2500 | 278..373 | 133 | 63.5 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 310..369 | 131 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1463..1607 | 233..376 | 128 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2586..2656 | 297..373 | 128 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1614 | 333..436 | 118 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2668 | 291..501 | 118 | 57.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1113 | 323..373 | 111 | 68.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 255..340 | 110 | 62.1 | Plus |
MXO02431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:10 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:33 Download gff for
MXO02431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3796-PA | 1..606 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:30 Download gff for
MXO02431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..669 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:40 Download gff for
MXO02431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..669 | 9..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:40 Download gff for
MXO02431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 370094..370699 | 9..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:30 Download gff for
MXO02431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 264127..264732 | 9..615 | 99 | | Plus |