Clone MXO02432 Report

Search the DGRC for MXO02432

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:32
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptsc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02432.3prime Sequence

877 bp (814 high quality bases) assembled on 2006-12-21

> MXO02432.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTGCCATAGAGAGATGTAGTCCAAAA
TCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTCG
TACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGTC
CAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCTT
CGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGGC
GAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTCC
ACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTCA
GCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAGA
GGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAACT
GCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGTT
GAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAGG
TCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCAG
TGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTTG
TCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAAG
CTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTTG
GACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGCG
ATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGGT
GTATACTTGCGAGTCTTAATTGGCATT

MXO02432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 177..1035 877..19 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 294..1152 877..19 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396353..397211 877..19 4295 100 Minus
Blast to na_te.dros performed 2014-11-28 19:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 396..225 150 57.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6940 399..224 136 57.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 396..315 133 65.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 399..225 124 59.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 399..368 124 87.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 455..344 122 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 397..315 121 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 399..325 117 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 399..227 116 59.6 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 430..363 110 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1073..1121 399..351 110 69.4 Minus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 430..363 110 66.7 Minus

MXO02432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:11 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:33 Download gff for MXO02432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 177..1038 16..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:55 Download gff for MXO02432.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 294..1158 11..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:00 Download gff for MXO02432.3prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 294..1158 11..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:00 Download gff for MXO02432.3prime
Subject Subject Range Query Range Percent Splice Strand
X 396353..397217 11..877 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:55 Download gff for MXO02432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290386..291250 11..877 99   Minus

MXO02432.5prime Sequence

844 bp (546 high quality bases) assembled on 2006-12-21

> MXO02432.5prime
CAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTACCATGTCA
TCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATCAATTCGGC
AACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAGTCCATTAA
TTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAATTAAGACT
CGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCTGAATCAGT
ATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGTAGACCAAT
CCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTGTAAAGCAG
GTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAATCCATAAT
CACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAAGATCTCCA
AAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGCTTCAGGAT
CTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAACAATGCAGT
CACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAGTTCGAGCA
GCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAAACACGATC
TCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAGCAGTTCAA
TCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGTGGGCACAT
CCGTACCAGGTGGAGATGCATGATGCGTATCCACCAGCAAAAACCAGCAA
ACCTGCCACTCGCCNACATCATCATTCAGCTCCAGCATGTCCTT

MXO02432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3827-PA 1038 sc-RA 1..836 9..844 4111 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
sc-RA 1438 CG3827-RA 118..953 9..844 4139 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 396177..397012 9..844 4139 99.6 Plus
Blast to na_te.dros performed 2014-11-28 20:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2512 666..837 152 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2899 666..747 133 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6891 663..837 126 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6819 663..694 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6824 663..718 123 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2744..2853 607..718 122 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2866 665..747 121 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6928 663..835 118 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6872 663..737 117 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2467 669..837 114 56.8 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5619..5684 632..699 110 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1073..1121 663..711 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7074..7139 632..699 110 66.7 Plus

MXO02432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:13 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:34 Download gff for MXO02432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3827-PA 1..836 9..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:15 Download gff for MXO02432.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..953 3..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:45 Download gff for MXO02432.5prime
Subject Subject Range Query Range Percent Splice Strand
sc-RA 114..953 3..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:45 Download gff for MXO02432.5prime
Subject Subject Range Query Range Percent Splice Strand
X 396173..397012 3..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:15 Download gff for MXO02432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 290206..291045 3..844 99   Plus