MXO02432.3prime Sequence
877 bp (814 high quality bases) assembled on 2006-12-21
> MXO02432.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTGCCATAGAGAGATGTAGTCCAAAA
TCTCCTCGTCGTCGGGGGTGCAGTCCTCCTCGTCTAATTGAAAATGTTCG
TACGGTTCAAATTTTAGCTGAAGTTGGGAGTGCGTGTGTAATTCGTTGTC
CAGATGATCCAGACGATCCAGGTGGGTGGATATTTGTTGGGGAACTCCTT
CGTAGGTGCCTGAATCAAAGGACATGCTGGAGTTGAATGATGATGTTGGC
GAGTGGCAGGTTTGCTGGTTTTTGCTGGTGGATACGCATCCTGCATCTCC
ACCTGGTACGGATGTGCCCACCAAGTTGGTATTTAATGAGAGCGCTGTCA
GCGGTTGGTGATTGAACTGCTGCCTCTGTAGCTGCTGCTGTTGTTGCAGA
GGACTGACAGAGATCGTGTTTTGATAGTAGGTATTATGCCCTGAGGAACT
GCAAGTACTGCTGCTCGAACTGTGACTGCTGGACTCATCCAAACAAAGTT
GAAGCTGGGTGACTGCATTGTTGGCACCAATATTGCTGCCCCCATTTAGG
TCATCCACCAGATCCTGAAGCCTCCGGATGTACTCGACGGCAATGCGCAG
TGTGTCTACTTTGGAGATCTTTTTGTGAGGTCCTCGACCACCACCCTTTG
TCAAATCCGTGATTATGGATTGTGGTATATGTTGCCGCAACCTGGCGAAG
CTGTTGTTCACCTGCTTTACACGATTTCGTTCTCTAGCATTGCGCCTTTG
GACCGACTGGGATTGGTCTACATTATATGGAGCCGGCGAGGAACCAGGCG
ATAGAGATGATACTGATTCAGAGCATCTGGTCAGTGCCATACCCCTTGGT
GTATACTTGCGAGTCTTAATTGGCATT
MXO02432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 177..1035 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 294..1152 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396353..397211 | 877..19 | 4295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 396..225 | 150 | 57.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 399..224 | 136 | 57.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 396..315 | 133 | 65.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 399..225 | 124 | 59.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 399..368 | 124 | 87.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 455..344 | 122 | 58.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 397..315 | 121 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 399..325 | 117 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 399..227 | 116 | 59.6 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 430..363 | 110 | 66.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 399..351 | 110 | 69.4 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 430..363 | 110 | 66.7 | Minus |
MXO02432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:11 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:33 Download gff for
MXO02432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 177..1038 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:55 Download gff for
MXO02432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 294..1158 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:00 Download gff for
MXO02432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 294..1158 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:00 Download gff for
MXO02432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396353..397217 | 11..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:55 Download gff for
MXO02432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290386..291250 | 11..877 | 99 | | Minus |
MXO02432.5prime Sequence
844 bp (546 high quality bases) assembled on 2006-12-21
> MXO02432.5prime
CAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTACCATGTCA
TCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATCAATTCGGC
AACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAGTCCATTAA
TTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAATTAAGACT
CGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCTGAATCAGT
ATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGTAGACCAAT
CCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTGTAAAGCAG
GTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAATCCATAAT
CACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAAGATCTCCA
AAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGCTTCAGGAT
CTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAACAATGCAGT
CACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAGTTCGAGCA
GCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAAACACGATC
TCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAGCAGTTCAA
TCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGTGGGCACAT
CCGTACCAGGTGGAGATGCATGATGCGTATCCACCAGCAAAAACCAGCAA
ACCTGCCACTCGCCNACATCATCATTCAGCTCCAGCATGTCCTT
MXO02432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3827-PA | 1038 | sc-RA | 1..836 | 9..844 | 4111 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sc-RA | 1438 | CG3827-RA | 118..953 | 9..844 | 4139 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 396177..397012 | 9..844 | 4139 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 666..837 | 152 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 666..747 | 133 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 663..837 | 126 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6819 | 663..694 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6824 | 663..718 | 123 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 607..718 | 122 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 665..747 | 121 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6928 | 663..835 | 118 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 663..737 | 117 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2467 | 669..837 | 114 | 56.8 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 632..699 | 110 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 663..711 | 110 | 69.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 632..699 | 110 | 66.7 | Plus |
MXO02432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:27:13 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:34 Download gff for
MXO02432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3827-PA | 1..836 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:15 Download gff for
MXO02432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..953 | 3..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:45 Download gff for
MXO02432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sc-RA | 114..953 | 3..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:45 Download gff for
MXO02432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 396173..397012 | 3..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:15 Download gff for
MXO02432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 290206..291045 | 3..844 | 99 | | Plus |