Clone Sequence Records
MXO02433.3prime Sequence
732 bp (732 high quality bases) assembled on 2006-12-21
> MXO02433.3prime
ATGGTCTAGAAAGCTTGCATTATGGTGCATGGTCTCGTGGTTCTTAAGGG
CAGAGTTTCTGTTGAAGATCTTGGGGCATCGGGAACACTTGTAGGATCGT
AATTCAGGTCTCGAACTATGTACGCGCTCATGGCGCCTAAGACCGCGGAT
TTGTGCGTAGGACTGGGAGCATTGTAAGCATTTGTAAGGTTTTTCACGCG
CATGGACCCACATGTGACACTTAAGGTGCGCAGGTAACATGAAATACTTC
CCGCAAATGTTACATTTATGTGTCTTCTTCAGCATTTTCTTCTTGGTATC
CTTCTGGGCGCTGCTCTGGCTCACATTGCCATTCCCGTTGGAGTTTGAGT
TGGGGCACATATTCTCCACGTTGTCCCCCGGTGAATCGATTGTCAAGTCA
ATTGTCTCCATCTCCTGGCTGCCATCGACTGGCTCAATCAGTTCAACATC
GGAGTCATTCGATCCTTCTTCCTCATAATTCATCTCACTGACCACCATCT
CATCCTGCTCAATCACCTGCACGCTGTCCATCCCGTAAGCAGTCTGCGCA
TCCAGCGCACAAGACTGGCAAATGGTCTTGGGAAAAGGATCCTTCGGTAG
AACCGGGAAGCCGCACCAATCGGAAATCATGGTCGCTAGGGAAACGCCGG
GTAGCGGCATCGTTTCGAAGATGCATAGCATGTTCTCCATCTCCCTCAAA
CAGACACGGCACATCCTGGAATCCATGTCGAC
MXO02433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4318-PA | 699 | CG4318-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4318-RB | 1464 | CG4318-RB | 65..772 | 726..19 | 3540 | 100 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 778..858 | 99..19 | 375 | 97.5 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 864..944 | 99..19 | 375 | 97.5 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 950..1030 | 99..19 | 375 | 97.5 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 99..19 | 375 | 97.5 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 99..19 | 375 | 97.5 | Minus |
| CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 99..25 | 345 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13154153..13154860 | 19..726 | 3540 | 100 | Plus |
| X | 23542271 | X | 13153723..13153803 | 19..99 | 375 | 97.5 | Plus |
| X | 23542271 | X | 13153809..13153889 | 19..99 | 375 | 97.5 | Plus |
| X | 23542271 | X | 13153895..13153975 | 19..99 | 375 | 97.5 | Plus |
| X | 23542271 | X | 13153981..13154061 | 19..99 | 375 | 97.5 | Plus |
| X | 23542271 | X | 13154067..13154147 | 19..99 | 375 | 97.5 | Plus |
| X | 23542271 | X | 13153643..13153717 | 25..99 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:08 has no hits.
MXO02433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:15 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:35 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:21 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 62..775 | 15..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:19 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 62..775 | 15..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:19 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13154150..13154863 | 15..732 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:21 Download gff for
MXO02433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13048183..13048896 | 15..732 | 99 | | Plus |
MXO02433.5prime Sequence
732 bp (549 high quality bases) assembled on 2006-12-21
> MXO02433.5prime
CAGTCGACATGGATTCCAGGATGTGCCTTGTCTGTTTGAGGGAGATGGAG
AACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTTTCCCTAGC
GACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAAGGATCCTT
TTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCACAGACTGCTTAC
GGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTGGTCAGTGA
GATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGAACTGATTG
AGCCAGTCGATGGCAGCCAGGAGATGGAGACGATTGACTTGACAATCGAT
TCACCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAACTCCAACGG
GAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAAGAAGAAAA
TGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATTTCATGTTA
CCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAAAAACCTTA
CGAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGGTCTTAGGC
GCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCTACAAGTGT
TCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAGAACCACGA
GACCATGCACCATAATGCAAGCTTTCTAGACC
MXO02433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4318-PA | 699 | CG4318-RA | 1..696 | 21..716 | 3380 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4318-RB | 1464 | CG4318-RB | 65..772 | 9..716 | 3480 | 99.4 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 778..858 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 864..944 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 950..1030 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 636..710 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13154153..13154860 | 716..9 | 3480 | 99.4 | Minus |
| X | 23542271 | X | 13153723..13153803 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153809..13153889 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153895..13153975 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153981..13154061 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13154067..13154147 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153643..13153717 | 710..636 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:47 has no hits.
MXO02433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:17 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-PA | 1..699 | 21..720 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:35 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-PA | 1..699 | 21..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:45 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 60..775 | 1..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:03 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 60..775 | 1..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:03 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13154150..13154864 | 1..720 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:45 Download gff for
MXO02433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13048183..13048897 | 1..720 | 98 | | Minus |
