Clone Sequence Records
MXO02434.3prime Sequence
831 bp (810 high quality bases) assembled on 2006-12-21
> MXO02434.3prime
ATGGTCTAGAAAGCTTGCTTCTTCTATTTCAGTATTTGGCATGAAACCCG
TGCATTTTGAAGCACCACAGAGGCAAGTCTTTCCACCTGTCATCTTTTTA
TACTGCCCTTCTCCGCCATAATGAAAGCATAACTCCTCCTTGGCCGCAAT
ATCCCTTGCTGCGAAAATACCTATTTTTGGTATGGGACAGTCTATTCGTA
CAGCTGCTATATGACAGTTCGGTTCGCAGCTGTGGTTCAGGTAGCGTCCG
ATGTTTCCACGTCTTGATGGATCAACGATGGTCACCTGTTGCTTCTTGTC
GCTAGTGTATTCATTAAGCACCAGGATATAGTTCATCAGGCCTAGTTTTT
CATTATCATGCAAGCGGCTTCTTGCCTCGGGAACCGTTAAAAGTTCTCCG
GCATATTCGCAAATGTATCCTCCTTTTGTAATTTTCGCTGTAGTCCGTAG
TCCTTTGGATCCGTACACGGGCGAATCGAATATTTCCAAATGTTTCCTCG
GGCCTGAGTACACAAGCCGATTGGAGCACGTGTTTCTACAGCATTTGCAC
ATGTCATTGCACTCAATGACAGGATTTGCGGAATTCCGAAGAATTAATTC
GCTGCCATCTTCTGTGAACTCATATTGGCCTCCATGTGCACAGACTTCGC
TGTTTTCGCAGGCTCCTTTGCAGTGACAGGGGTTCAAAAGAACAGAATTG
TACTCGTCCGCCAAGAATTTGAATTCTTTACTTCCATCGCTGGGCATCAA
CACAGATTCCAATATGTAATCGAGTCCATCTGGGTGCTCATAGTCGTCAT
TCGGAGCTGTTTCAGATTCGTCCATGTCGAC
MXO02434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4565-PA | 672 | CG4565-RA | 1..656 | 825..170 | 3280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4565-RB | 866 | CG4565-RB | 19..825 | 825..19 | 4035 | 100 | Minus |
| CG6567-RB | 1017 | CG6567-RB | 801..942 | 32..173 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10852742..10853397 | 825..170 | 3280 | 100 | Minus |
| 3R | 32079331 | 3R | 10853449..10853603 | 173..19 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:03 has no hits.
MXO02434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:18 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-PA | 1..662 | 164..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:36 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-PA | 1..662 | 164..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:09 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-RB | 13..828 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:45 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-RB | 13..828 | 15..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:45 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10852736..10853396 | 171..831 | 99 | -> | Minus |
| 3R | 10853452..10853606 | 15..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:09 Download gff for
MXO02434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679174..6679328 | 15..170 | 98 | | Minus |
| arm_3R | 6678458..6679118 | 171..831 | 99 | -> | Minus |
MXO02434.5prime Sequence
831 bp (831 high quality bases) assembled on 2006-12-21
> MXO02434.5prime
CAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACTATGAGCAC
CCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCCAGCGATGG
AAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGTTCTTTTGA
ACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCTGTGCACAT
GGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATTCTTCGGAA
TTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATGCTGTAGAA
ACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAACATTTGGAA
ATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACTACAGCGAA
AATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACTTTTAACGG
TTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAGGCCTGATG
AACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAGCAACAGGT
GACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTACCTGAACC
ACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAGACTGTCCC
ATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCCAAGGAGGA
GTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGATGACAGGTG
GAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCATGCCAAAT
ACTGAAATAGAAGAAGCAAGCTTTCTAGACC
MXO02434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4565-PA | 672 | CG4565-RA | 1..656 | 9..664 | 3280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4565-RB | 866 | CG4565-RB | 19..825 | 9..815 | 4035 | 100 | Plus |
| CG6567-RB | 1017 | CG6567-RB | 801..942 | 802..661 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10852742..10853397 | 9..664 | 3280 | 100 | Plus |
| 3R | 32079331 | 3R | 10853449..10853603 | 661..815 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:20 has no hits.
MXO02434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:20 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-PA | 1..662 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:36 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-PA | 1..662 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:26 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-RB | 19..828 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:15 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4565-RB | 19..828 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:15 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10852742..10853396 | 9..663 | 100 | -> | Plus |
| 3R | 10853452..10853606 | 664..819 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:26 Download gff for
MXO02434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6678464..6679118 | 9..663 | 100 | -> | Plus |
| arm_3R | 6679174..6679328 | 664..819 | 98 | | Plus |
