Clone MXO02435 Report

Search the DGRC for MXO02435

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:35
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4956-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02435.3prime Sequence

861 bp (844 high quality bases) assembled on 2006-12-21

> MXO02435.3prime
ATGGTCTAGAAAGCTTGCCACTGTCTGCTTCTGGAACCACTGAGTGCCAT
CGGTAGGAAGAGGACTTGAGATCGTTGGAGAGAAAAAAATCCAGAAGCGC
CGTTTTCCCAAGACCATATCAAAATTTCTTCTCCAACCAACATCATAGCT
GCGATCGAGCATCTTATAGCATGTACTATTCCGATATACCATTATCATTT
GAAAGACGAACATGAAGAGGGGGACGCCAAAAAGAAATAAATTCAGTTTG
AAAAGGTTGGCGATTGTGTACTTCCATTTGAAATCAGCATCTTGGGTTGT
ATCCTGGAACATTAGCAACAAAGGATCGACGACCAAAAAGGCCTTGTTTG
TCCAATTCAAAATGCCATTGTAGACGAGCGCCTGTCCGCTGCCAAAGCTC
AGGTGAAACAAGAAGGCAAGGAAATACCTCTGATTTTTATGGCCAATGCA
ACTGGCAAAGAAGGTGCAGTGGTGATCCCGCTTCAGAATGCAAATGTTGC
ACAAACTACAGTGCCAGGACCTCGGTGGCACCAGCTTTTGGCATGTGGAG
CAGTAGTGCCACAGGTGAGCCTCACCTGCCACAGGATACTGTCTTTCCAG
AACTAAGCTATCGACTGAGGTATTGGTCATACAGCCGAGCCACCAGTTGC
CCAATATATTGATGACTGTATAAATTCCCATAAACCAACACAATTTGTGC
CATATACCATGGGGATCAGTTATTTGCGGCAAAACGTAGCATAATTCATA
GACAAACAGCAATCCAATCAGACAGAGTAAAAATATTGCACAAAACGGAT
GAAGTAGGCCCATAACTTTTATGCGATGTAGTTGAAAGTGACGATGAAAC
CCTTCCTCGGC

MXO02435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 64..906 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 140..982 861..19 4215 100 Minus
CG17197-RB 1958 CG17197-RB 429..531 530..428 215 80.6 Minus
CG17198-RB 1958 CG17198-RB 429..531 530..428 215 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777324..25778166 19..861 4215 100 Plus
3R 32079331 3R 25774839..25774941 428..530 215 80.6 Plus
Blast to na_te.dros performed on 2014-11-28 22:04:07 has no hits.

MXO02435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:21 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 64..909 15..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:36 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 64..909 15..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:52 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 140..989 10..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:48 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 140..989 10..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:48 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777316..25778166 10..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:52 Download gff for MXO02435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603038..21603888 10..861 99   Plus

MXO02435.5prime Sequence

803 bp (672 high quality bases) assembled on 2006-12-21

> MXO02435.5prime
CAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTTGCGGTTGG
AGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGTCACTTTCA
ACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTGTGCAATAT
TTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTATGCTACGTT
TTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTGTGTTGGTT
TATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTGGCTCGGCT
GTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGACAGTATCCT
GTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGCCAAAAGCT
GGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTGCATTCTGA
AGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCCATAAAAAT
CAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGCAGCGGACA
GGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGCCTTTTTGG
TCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAGATGCTGAT
TTCAAATGGAAGTACACAATCGCCAACCTTTTCAGACTGAATTTATTTCT
TTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAATGGAATATC
GGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATGTTGGTTGG
AGA

MXO02435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 1..795 9..803 3925 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 77..871 9..803 3945 99.7 Plus
CG17197-RB 1958 CG17197-RB 429..531 403..505 215 80.6 Plus
CG17198-RB 1958 CG17198-RB 429..531 403..505 215 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777435..25778229 803..9 3945 99.7 Minus
3R 32079331 3R 25774839..25774941 505..403 215 80.6 Minus
Blast to na_te.dros performed on 2014-11-28 20:00:31 has no hits.

MXO02435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:23 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..794 9..802 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:37 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..794 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:32 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..870 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:59 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..870 9..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:59 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777436..25778229 9..802 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:32 Download gff for MXO02435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603158..21603951 9..802 99   Minus