MXO02436.3prime Sequence
783 bp (663 high quality bases) assembled on 2006-12-21
> MXO02436.3prime
ATGGTCTAGAAAGCTTGCATCCGATTTAGTGCCGCATAGGGTTCGCCGCA
GGTGTCGCCCAAGACTGGACTTTTGTGTGTATCGGGTTGAGCAGTGTGAA
CACTTGTAGGGTTTTTCCCCCGTATGCGTTCGCAAGTGTTCCTGGTGTTC
TGCGCTTCTCGCAAACAATTTTGAGCAGTGCGAACACTTGAAGGGCAATT
CTCCCGTGTGCGTTCGCAAATGCATGTGAAGAGTCGAGCTAGTTGTATAG
GACTTCGAGCAGTGGGGACACTCGAATTGGTTTTTTCCAGTATGCTCTTG
CAGGTGCACCAGCAGTTGCGAGCTTAGTTTAAACTCCTTCGAGCAGTAGG
AACACTTGGGTACCTTTTCTCCAATATGATCAAGCATATGCACCCGAAGA
TGCGTACGACATTTGAAGTCCTTGAAACAGTGGGTACACTTAAAGGGCCG
CTCTCCCGTATGCACTTGCTGATGCTCCACAAGATGTGACTTCTTGAAGA
AAGATTTCGAGCATTCGGCGCACTTGTACTGTCGCTCTCTTGTATGCAAA
CGCACGTGGACTCGATAAAGTGACCTCATGGCAAAGGTGGCTGAGCACTG
GGAACACTTCAGGGGCTCTTTTCCAGCGTGCTCAAGTAAGTGTAGTTGAA
GTCTCGAATTCCTTGCAAAGGTCTCTGAGCAATGGGGACACTTGAACGGG
TCTTCGCCCGCGTGCACTCGCAAATGAATTTGCAAACTATCATTCTGCAG
AAAAGTCTTCGGGCACTGGGTACACTTAAAGGA
MXO02436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5245-PA | 1506 | CG5245-RA | 739..1503 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5245-RA | 1623 | CG5245-RA | 796..1560 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12430408..12431172 | 783..19 | 3825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:12 has no hits.
MXO02436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:25 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-PA | 740..1506 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:37 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-PA | 740..1506 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:10 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-RA | 797..1563 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:00 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-RA | 797..1563 | 15..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:00 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12430409..12431175 | 15..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:10 Download gff for
MXO02436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8256131..8256897 | 15..782 | 99 | | Minus |
MXO02436.5prime Sequence
806 bp (721 high quality bases) assembled on 2006-12-21
> MXO02436.5prime
CAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGAAGGACGAA
CCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATTTCTAACAG
CGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTTCTGTAGTT
ATGGCAGAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGCTGAAGACG
TGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAAACAGATAC
GTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGAAAACCTCG
AATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGTGTTCCCAC
TGCTCAAAAACCTTTACCCAGAATTCGTCGCTTAAACAACATCTGCATGA
GCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGACGTCGTTCG
CGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTGAAGAACGA
CCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAATTCACATCT
CCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAAGTGTTCCC
ACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGCACTTGCTG
ACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAGACTTTTCT
GCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGGCGAAGACC
CGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATTCGAGACTT
CAACTA
MXO02436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5245-PA | 1506 | CG5245-RA | 413..879 | 340..806 | 2310 | 99.7 | Plus |
| CG5245-PA | 1506 | CG5245-RA | 1..347 | 9..355 | 1710 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5245-RA | 1623 | CG5245-RA | 470..936 | 340..806 | 2320 | 99.8 | Plus |
| CG5245-RA | 1623 | CG5245-RA | 58..414 | 9..365 | 1725 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12430082..12430548 | 340..806 | 2320 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12429670..12430026 | 9..365 | 1725 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1342..1379 | 603..640 | 109 | 76.3 | Plus |
MXO02436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:26 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-PA | 1..334 | 9..341 | 99 | | Plus |
| CG5245-PA | 415..878 | 342..805 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:38 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-PA | 1..334 | 9..341 | 99 | -> | Plus |
| CG5245-PA | 415..878 | 342..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:58 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-RA | 49..391 | 1..341 | 98 | -> | Plus |
| CG5245-RA | 472..935 | 342..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:51 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5245-RA | 49..391 | 1..341 | 98 | -> | Plus |
| CG5245-RA | 472..935 | 342..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:51 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12429663..12430003 | 1..341 | 98 | -> | Plus |
| 3R | 12430084..12430547 | 342..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:58 Download gff for
MXO02436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8255385..8255725 | 1..341 | 98 | -> | Plus |
| arm_3R | 8255806..8256269 | 342..805 | 99 | | Plus |
