Clone Sequence Records
MXO02437.3prime Sequence
471 bp (471 high quality bases) assembled on 2006-12-21
> MXO02437.3prime
ATGGTCTAGAAAGCTTGCCCAGGGCCTCCAGAGATTTGGCTTGGATTTGG
ATGTGGAGGCCACAAGATGATCCAATTCTTTCGCAAATTCGAAACTCGGC
TGATAGCCGTTGTGTTGCAGAAATTGGGACACTTCCAGGACGCATTCTCG
AAAGCCACTCCAATAGCAATCAATTGGGCTCTGATATACTCCGGATGTAG
GCGCTGTGGTGGGCGTGGCCACCGGACAGTTTTTCTTGCTCAGGTGGTGA
ACTGCCAATTCCAGGACATCTCCCATATCCATTTTGGCCATGGTCTCGCC
GTCCAGATGCGACACCTCCTGAAGCAGGTCCTTAATAAAGTCCAGGCAGC
GATTGATGCGTGACCGCCTCTTCCTCTCCATCATTGGCTTAAAAACCTCT
CGATACTGATGAGATCGTGACTTTGCTCCAACATGAGACTTCTGCTCCTC
GGGACGTGCCATCATGTCGAC
MXO02437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5927-PA | 450 | Her-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 614 | CG5927-RA | 25..471 | 465..19 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18204546..18204831 | 19..304 | 1430 | 100 | Plus |
| X | 23542271 | X | 18204958..18205120 | 303..465 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:55 has no hits.
MXO02437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:28 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:38 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5927-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:14 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 20..471 | 19..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:36 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 20..471 | 19..471 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:36 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18204546..18204830 | 19..303 | 100 | <- | Plus |
| X | 18204959..18205124 | 304..471 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:14 Download gff for
MXO02437.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18098579..18098863 | 19..303 | 100 | <- | Plus |
| arm_X | 18098992..18099157 | 304..471 | 97 | | Plus |
MXO02437.5prime Sequence
471 bp (471 high quality bases) assembled on 2006-12-21
> MXO02437.5prime
CAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATGTTGGAGCA
AAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATGATGGAGAG
GAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAAGGACCTGC
TTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAATGGATATG
GGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAAAACTGTCC
GGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCAGAGCCCAA
TTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAGTGTCCCAA
TTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCGAAAGAATT
GGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCTCTGGAGGC
CCTGGGCAAGCTTTCTAGACC
MXO02437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5927-PA | 450 | Her-RA | 1..447 | 9..455 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Her-RA | 614 | CG5927-RA | 25..471 | 9..455 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18204546..18204831 | 455..170 | 1430 | 100 | Minus |
| X | 23542271 | X | 18204958..18205120 | 171..9 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:54 has no hits.
MXO02437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:29 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-PA | 1..450 | 9..456 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:38 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5927-PA | 1..450 | 9..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:47 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 1..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:06 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Her-RA | 18..471 | 1..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:06 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18204959..18205127 | 1..170 | 97 | | Minus |
| X | 18204546..18204830 | 171..455 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:47 Download gff for
MXO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18098992..18099160 | 1..170 | 97 | | Minus |
| arm_X | 18098579..18098863 | 171..455 | 100 | <- | Minus |
