Clone MXO02438 Report

Search the DGRC for MXO02438

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:38
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSox21a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02438.3prime Sequence

757 bp (735 high quality bases) assembled on 2006-12-21

> MXO02438.3prime
ATGGTCTAGAAAGCTTGCAATGATGTTTGGCGGACTGGCCGCGCTGGCCA
CTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGAG
ATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTAT
CAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCCT
GGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTGG
GCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTGG
CGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACAT
GATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTGG
TGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACTG
GGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCGG
AGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACCG
CCGCCACCACCACCACCTGGCACTGGTGACTTGTTGAGCGTCTTGGGCTT
GCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCCC
GCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAGT
AATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTTT
TGGATTG

MXO02438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 426..1164 757..19 3670 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 821..1559 757..19 3680 99.9 Minus
Sox21a-RA 2335 CG7345-RA 821..1559 757..19 3680 99.9 Minus
Sox21b-RC 3201 CG32139-RC 1674..1834 756..596 370 82.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14104257..14104888 19..650 3145 99.8 Plus
3L 28110227 3L 14106541..14106649 649..757 545 100 Plus
3L 28110227 3L 14176684..14176840 591..747 335 80.9 Plus
2L 23513712 2L 8827093..8827270 757..580 260 76.4 Minus
3L 28110227 3L 14118633..14118695 652..714 180 85.7 Plus
Blast to na_te.dros performed on 2014-11-28 23:12:42 has no hits.

MXO02438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:31 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 426..1167 16..757 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:39 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 426..1167 16..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:49 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 821..1559 19..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:19 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 821..1559 19..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:19 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14106542..14106649 650..757 100   Plus
3L 14104257..14104887 19..649 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:49 Download gff for MXO02438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097357..14097987 19..649 99 <- Plus
arm_3L 14099642..14099749 650..757 100   Plus

MXO02438.5prime Sequence

804 bp (802 high quality bases) assembled on 2006-12-21

> MXO02438.5prime
CAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCCACAGCCAC
AGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCATAGCAGCAG
TCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCATGGTCGGTG
GCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGGGAAACACC
ACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCAGCGGCCCC
CACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCATGGCAACT
CCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTGGAAGCCAT
CACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTCATGGTCTG
GTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAAAATGCACA
ATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTACTCACCGAA
GGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGGGCTCTGCA
CATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAAGCCCAAGA
CGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCGGTGGAGGT
GGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCCGGTCCCAG
TGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCAGTTGTCGC
CCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACCAGTCACCA
TATC

MXO02438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7345-PA 1167 Sox21a-RA 1..796 9..804 3955 99.8 Plus
CG32139-PA 1716 Sox21b-RA 751..777 378..404 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sox21a-RB 2335 CG7345-RB 395..1191 8..804 3970 99.9 Plus
Sox21a-RA 2335 CG7345-RA 395..1191 8..804 3970 99.9 Plus
Sox21b-RC 3201 CG32139-RC 1605..1834 366..595 520 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14106541..14107075 542..8 2675 100 Minus
3L 28110227 3L 14104625..14104888 804..541 1305 99.6 Minus
3L 28110227 3L 14176684..14176918 600..366 485 80.4 Minus
2L 23513712 2L 8827031..8827270 372..611 375 77.1 Plus
3L 28110227 3L 14125085..14125194 475..366 250 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:03:43 has no hits.

MXO02438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:33 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..796 9..804 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:39 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7345-PA 1..796 9..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:00 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 388..1191 1..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:10 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
Sox21a-RA 388..1191 1..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:10 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14104625..14104887 542..804 99 <- Minus
3L 14106542..14107078 1..541 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:00 Download gff for MXO02438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14097725..14097987 542..804 99 <- Minus
arm_3L 14099642..14100178 1..541 99   Minus