Clone Sequence Records
MXO02438.3prime Sequence
757 bp (735 high quality bases) assembled on 2006-12-21
> MXO02438.3prime
ATGGTCTAGAAAGCTTGCAATGATGTTTGGCGGACTGGCCGCGCTGGCCA
CTACCGCATTTGGTGAGGACTTCTCTGACTTGACGCATCCGTAGGATGAG
ATGCCGGTACCGCTGCTGCTGGGCGGGGAGGGTGGAGTTTCCGGACTTAT
CAGCGGCAGATATCGCCACGGGTGGTAGATGGAGCCGGCGTACATCGCCT
GGAGGCGCGCCTGTAGGTCCAGGGCCAACGTGGGATCCAGTGGATAGTGG
GCGAGGCCGGGAAAGGCATTCGGCAGGCGGGGCAGCGATAACTCCAGTGG
CGAACCAAAACCGTACTTGGCGCTCAAGGTGGCGGCGGCCAGCTGGACAT
GATGTGGATGAGGATGCGGGTGGTGTGGATGCGATTGATATGGTGACTGG
TGCGGATGTCCGTGGAGATGTGGCAGCGACTGACCCAAGGGCGACAACTG
GGGCTGCATATCCTTGGGGGAGCCAACTGATCCTGGGCCACTGGGACCGG
AGTTACCCGCACCACCAGCGTTGACACCACCGTTGGCACCACCTCCACCG
CCGCCACCACCACCACCTGGCACTGGTGACTTGTTGAGCGTCTTGGGCTT
GCGACGTGGTCGATACTTGTAGTCGGGATGTTCTTTCATGTGCAGAGCCC
GCAATCGTTTTGCCTCGTCGATGAATGGACGCTTCTGTCCTTCGGTGAGT
AATTTCCACTCGGCGCCCAGGCGTTTTGATATTTCAGAATTGTGCATTTT
TGGATTG
MXO02438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 426..1164 | 757..19 | 3670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 821..1559 | 757..19 | 3680 | 99.9 | Minus |
Sox21a-RA | 2335 | CG7345-RA | 821..1559 | 757..19 | 3680 | 99.9 | Minus |
Sox21b-RC | 3201 | CG32139-RC | 1674..1834 | 756..596 | 370 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14104257..14104888 | 19..650 | 3145 | 99.8 | Plus |
3L | 28110227 | 3L | 14106541..14106649 | 649..757 | 545 | 100 | Plus |
3L | 28110227 | 3L | 14176684..14176840 | 591..747 | 335 | 80.9 | Plus |
2L | 23513712 | 2L | 8827093..8827270 | 757..580 | 260 | 76.4 | Minus |
3L | 28110227 | 3L | 14118633..14118695 | 652..714 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:42 has no hits.
MXO02438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:31 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 426..1167 | 16..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:39 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 426..1167 | 16..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:49 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 821..1559 | 19..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:19 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 821..1559 | 19..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:19 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14106542..14106649 | 650..757 | 100 | | Plus |
3L | 14104257..14104887 | 19..649 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:49 Download gff for
MXO02438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097357..14097987 | 19..649 | 99 | <- | Plus |
arm_3L | 14099642..14099749 | 650..757 | 100 | | Plus |
MXO02438.5prime Sequence
804 bp (802 high quality bases) assembled on 2006-12-21
> MXO02438.5prime
CAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCCACAGCCAC
AGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCATAGCAGCAG
TCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCATGGTCGGTG
GCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGGGAAACACC
ACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCAGCGGCCCC
CACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCATGGCAACT
CCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTGGAAGCCAT
CACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTCATGGTCTG
GTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAAAATGCACA
ATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTACTCACCGAA
GGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGGGCTCTGCA
CATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAAGCCCAAGA
CGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCGGTGGAGGT
GGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCCGGTCCCAG
TGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCAGTTGTCGC
CCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACCAGTCACCA
TATC
MXO02438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7345-PA | 1167 | Sox21a-RA | 1..796 | 9..804 | 3955 | 99.8 | Plus |
CG32139-PA | 1716 | Sox21b-RA | 751..777 | 378..404 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sox21a-RB | 2335 | CG7345-RB | 395..1191 | 8..804 | 3970 | 99.9 | Plus |
Sox21a-RA | 2335 | CG7345-RA | 395..1191 | 8..804 | 3970 | 99.9 | Plus |
Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 366..595 | 520 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14106541..14107075 | 542..8 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 14104625..14104888 | 804..541 | 1305 | 99.6 | Minus |
3L | 28110227 | 3L | 14176684..14176918 | 600..366 | 485 | 80.4 | Minus |
2L | 23513712 | 2L | 8827031..8827270 | 372..611 | 375 | 77.1 | Plus |
3L | 28110227 | 3L | 14125085..14125194 | 475..366 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:43 has no hits.
MXO02438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:33 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..796 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:39 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7345-PA | 1..796 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:00 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 388..1191 | 1..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:10 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sox21a-RA | 388..1191 | 1..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:10 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14104625..14104887 | 542..804 | 99 | <- | Minus |
3L | 14106542..14107078 | 1..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:00 Download gff for
MXO02438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14097725..14097987 | 542..804 | 99 | <- | Minus |
arm_3L | 14099642..14100178 | 1..541 | 99 | | Minus |