MXO02439.3prime Sequence
847 bp (767 high quality bases) assembled on 2006-12-21
> MXO02439.3prime
ATGGTCTAGAAAGCTTGCGTTGACTACCTCAACGCTGTCTTCCTCCTCTT
GCTCCTCCTCCGCCTCGGCGGGATCCTCATCCTCTGGCGTTTCCAAGGGT
GGAGCAACTGGACTATCCTGGCTGCTCTCGCAGGAACTGGATTCCAGGCA
CTCCAGACGGTTGCTATCCAGTCGGAGTCGTTTCTCCGGCTTCTTGAGCA
GTTCTTCGATGGAGTACGGATTCCGCTTGCGGCTGTGGCTGAGTGTCGAT
CCTGGTGAAGCCTCTGGAGCTGATCCGGCGCCATTTCCACCTCCAGAAGC
GGTTAGTGAGAGTGCCGCCGGGGAGGATTTACCGGAGTCGCAGTCGCTAA
GCGCATCGCCAGCCGCTCCGGGAGTCGAAAGATCGATGGAGCTCTCCGAC
TTGGTGAAACCACCCAAGGCGGATGTGGAAGATGCGGCCGCCGCTGCCAT
GGCATGGGGCAAATAGCCACCGGCATAGGGCAGGAATTGACCACCCGACG
CAGCCGCCTGGGCCTGAATGTGAGCCTGGGTGTAGTAGAGCAGGGAGGGA
TTCCACAGCCAGTGCTTGTGTAGAGCGGAGTAACTCAAGTCCAGGCCCGA
AACATTGGGGTTCAGGCCGTGACTGTGGCCATGTCCCATGCTGGGCGGCA
TTTTGGGAGCGGGTTTAATTGGCATCTCGCCGGCGGAGTTCATCATCAAC
GCCGGCGGCTTGGCGTAGCGTGCGATGGAGGGCGTGGCTGCCGGTGTGGG
CGGAGCCACGGTTACCGGAGGAGGCGGAGCTTGGCCGCCATATCCATTCG
ATGGACCACTGCCCGCCTGATGAGCCGCTGCCGCTGCCGCCGCTGCA
MXO02439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8246-PA | 1278 | Poxn-RA | 447..1275 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxn-RB | 2458 | CG8246-RB | 1290..2118 | 847..19 | 4145 | 100 | Minus |
| Poxn-RA | 2320 | CG8246-RA | 1152..1980 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15827033..15827861 | 19..847 | 4145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:52 has no hits.
MXO02439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:34 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-PA | 448..1278 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:40 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8246-PA | 448..1278 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:22 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 1153..1983 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:35 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 1153..1983 | 15..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:35 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15827029..15827860 | 15..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:22 Download gff for
MXO02439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11714534..11715365 | 15..846 | 99 | | Plus |
MXO02439.5prime Sequence
855 bp (810 high quality bases) assembled on 2006-12-21
> MXO02439.5prime
CAGTCGACATGCCGCATACAGGTCAAGCTGGAGTCAACCAATTGGGCGGA
GTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGTTCGTCGGAGGATCGT
CGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATATATCCCGCCAGCTTC
TGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACTCGCTTCTATGAGACG
GGCTCCATTCGACCGGGATCCATTGGCGGCAGCAAGACCAAGCAAGTGGC
CACGCCCACCGTGGTGAAGAAGATCATCCGGCTAAAGGAGGAGAACAGCG
GCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAGCAGCAGCGCGTCTGC
GATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAACCGGATTCTGCGCAA
CAGCGGTCTGTGGACCGATGAGATGACATCCAGTCAGCAGAATGCCGCAG
CTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAGGCGGGCAGTGGTCCA
TCGAATGGATATGGCGGCCAAGCTCCGCCTCCTCCGGTAACCGTGGCTCC
GCCCACACCGGCAGCCACGCCCTCCATCGCACGCTACGCCAAGCCGCCGG
CGTTGATGATGAACTCCGCCGGCGAGATGCCAATTAAACCCGCTCCCAAA
ATGCCGCCCAGCATGGGACATGGCCACAGTCACGGCCTGAACCCCAATGT
TTCGGGCCTGGACTTGAGTTACTCCGCTCTACACAAGCACTGGCTGTGGA
ATCCCTCCCTGCTCTACTACACCCAGGCTCACATTCAGGCCCAGGCGGCT
GCGTCGGGTGGTCATTTCTGCCCTATGCCGGTGGCTATTTGCCCCCTGCC
ATGGC
MXO02439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8246-PA | 1278 | Poxn-RA | 1..806 | 9..814 | 4030 | 100 | Plus |
| CG8246-PA | 1278 | Poxn-RA | 811..848 | 818..855 | 165 | 97.3 | Plus |
| CG1070-PB | 2475 | Alh-RB | 1779..1805 | 449..475 | 135 | 100 | Plus |
| CG1070-PC | 2931 | Alh-RC | 1779..1805 | 449..475 | 135 | 100 | Plus |
| CG1070-PD | 3972 | Alh-RD | 3276..3302 | 449..475 | 135 | 100 | Plus |
| CG1070-PA | 4131 | Alh-RA | 3435..3461 | 449..475 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxn-RB | 2458 | CG8246-RB | 843..1691 | 8..855 | 4190 | 99.6 | Plus |
| Poxn-RA | 2320 | CG8246-RA | 705..1553 | 8..855 | 4190 | 99.6 | Plus |
| gsb-RA | 1649 | CG3388-RA | 344..454 | 126..236 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15827460..15828075 | 855..241 | 3000 | 99.5 | Minus |
| 2R | 25286936 | 2R | 15830314..15830457 | 163..20 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 15830166..15830246 | 242..162 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 25063338..25063448 | 126..236 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:09 has no hits.
MXO02439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:36 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-PA | 1..848 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:40 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8246-PA | 1..848 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:28 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 701..1553 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:03 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 701..1553 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:03 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15827460..15828073 | 243..855 | 99 | <- | Minus |
| 2R | 15830166..15830245 | 163..242 | 100 | <- | Minus |
| 2R | 15830315..15830455 | 22..162 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:28 Download gff for
MXO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11714965..11715578 | 243..855 | 99 | <- | Minus |
| arm_2R | 11717671..11717750 | 163..242 | 100 | <- | Minus |
| arm_2R | 11717820..11717960 | 22..162 | 100 | <- | Minus |
