Clone Sequence Records
MXO02440.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-12-21
> MXO02440.3prime
ATGGTCTAGAAAGCTTGCCCAGGGGCGCCAGACTTCTTCGCCATGATGAA
TATCCTCTTCTCGCGGAGACTTTGAACGTTTTTGGTCGGCTAGATTAACT
GGTTCTTCGGCCATATCGATGATTTCTTCTTCCTGTTTCATGTCCTTGAG
CTGGTGACCCAATTGCTTCATCAGGTGGGTGCCGAATTTGAGATCCAAGC
CGGGAACCGTAGAGAATATGTGCGAGACCTCGTAGGCAGCCTGGGTGTAT
CCGGCCCGAAATTTGTCCAGGTTAACTTGGTCGGGTGGTGGGGATTGAGG
ATTGGCCACTCGCTGCTGCTGTTGCGCTTTCAGATAGTTGACGGTGAGCT
CTAAGATGTCAGCTTTCTCCAGCTTGCTGACCTGTTCGCCCTGCGCATCC
ATGGTGTCCACGATGAGATCCTTGAGTTCGTCCAGATACAGGTTCATCCG
GGCGCGTCTTTTGCGCTCCAGGAGGGGTTTGGTCACCTTGCGGTAATGCT
GAGTCTTGGTCATAAATCTCTGACCCTGAACGGCCATGTCGAC
MXO02440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8328-PA | 522 | HLHmdelta-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..630 | 537..19 | 2595 | 100 | Minus |
| E(spl)m3-HLH-RA | 1305 | CG8346-RA | 210..382 | 513..341 | 235 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25997732..25998250 | 537..19 | 2595 | 100 | Minus |
| 3R | 32079331 | 3R | 26022032..26022204 | 513..341 | 235 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:44 has no hits.
MXO02440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:37 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8328-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:41 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8328-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:33 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 105..635 | 14..543 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:30 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 105..635 | 14..543 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:30 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25997725..25998249 | 20..543 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:33 Download gff for
MXO02440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21823447..21823971 | 20..543 | 99 | -> | Minus |
MXO02440.5prime Sequence
543 bp (166 high quality bases) assembled on 2006-12-21
> MXO02440.5prime
CAATCCACATGGCCGTTCAGGGTCAGAGATTTATGACCAACACTCACCAT
TACCGCTAGGTGACCAAACCCCTCCTGGAGCGCAAAAGACGCGCCCGGAT
GAACCTGTATCTGGACGAACTCGAGGATCTCATCGTGGACACCATGGATG
CGCAGGGCGAACAGGTCAACAAGCTGGATAAAGCTGACATCTTATAGCTC
ACCGTCCACTATCTGAAAGCGCAACAGCAGCAGCGAGTGGCCAATCCTCA
ATCCCCACCACCCGACCAAGTTAACCTGGACAAATTTCGGGCCGGATACA
CCCATTCTGCCTACGAGGTCTCGCACATATTCTCTACGGTTCCCGGCTTG
GATCTCAAATTCGGCACCCACCTGATGAAGCAATTGGGTCACCAGCTCAA
GGACATGAAACAGGAAAAAGAAATCATCGATATGGCCGATCAACCATTTA
ATCTACCCGACCAAAAACGTTCAAAGTCTCCGCGAGAAGAGGATATTCAT
CATGGCGAACAAGTCTGGCGCCCCTGGGCAAGCTTTCTAGACC
MXO02440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8328-PA | 522 | HLHmdelta-RA | 1..519 | 9..527 | 2195 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mdelta-HLH-RA | 1013 | CG8328-RA | 112..630 | 9..527 | 2355 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25997732..25998250 | 9..527 | 2355 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:37 has no hits.
MXO02440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:39 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8328-PA | 1..522 | 9..530 | 96 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:41 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8328-PA | 1..522 | 9..530 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:01 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 101..635 | 1..532 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:25 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mdelta-HLH-RA | 101..635 | 1..532 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:25 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25997721..25998249 | 1..526 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:01 Download gff for
MXO02440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21823443..21823971 | 1..526 | 96 | -> | Plus |
