Clone MXO02441 Report

Search the DGRC for MXO02441

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:41
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptlbl-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02441.3prime Sequence

859 bp (717 high quality bases) assembled on 2006-12-21

> MXO02441.3prime
ATGGTCTAGAAAGCTTGCGTCGTGTTGCGTGTAAATAGCAACATCCACAT
CCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCCA
TTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAGT
CTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACCT
GCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGGA
GTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACTT
CTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCCG
CCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCGC
TGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCAG
GGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGCT
GGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGCG
GGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCAA
GGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCTG
GTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATCC
TCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCCT
GACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTCA
AAAGCCGCAATCGTTTCATATTCAACGATCTCAGAGGCGGTGGACTGGGC
GACCCACCG

MXO02441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 49..703 852..198 3275 100 Minus
CG6545-PA 1440 lbe-RA 755..842 449..362 315 94.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 207..1048 859..19 4185 99.9 Minus
lbl-RC 1803 CG6570-RC 207..869 859..198 3290 99.8 Minus
lbl-RA 1855 CG6570-RA 207..869 859..198 3290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433919 198..852 3275 100 Plus
3R 32079331 3R 21426925..21427104 19..198 900 100 Plus
3R 32079331 3R 21445093..21445425 206..535 550 78.4 Plus
Blast to na_te.dros performed on 2014-11-28 19:46:14 has no hits.

MXO02441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:41 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 41..703 198..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 41..703 198..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:36 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 207..1048 19..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:43 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 207..1048 19..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:43 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21426925..21427103 19..197 100 <- Plus
3R 21433265..21433927 198..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:36 Download gff for MXO02441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252647..17252825 19..197 100 <- Plus
arm_3R 17258987..17259649 198..859 99   Plus

MXO02441.5prime Sequence

786 bp (700 high quality bases) assembled on 2006-12-21

> MXO02441.5prime
CAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTGATGTTTCG
GTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATGAAACGATT
GCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCAAAAGTCAT
CACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGGGGCGAGGG
CATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCCATTCCCAA
TGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGAAAGATTGC
AAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTACATACATTT
TTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCCTGGGACTA
CCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACTCCTCCGGC
AGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCAGTTCAGAG
CGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGCTGCAGTCC
CACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAGAATGGAGG
TTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCAAATCAAGT
GGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAAAACTTTGA
CGAAGAGCAGGTCAGTACATCGAAGAGGCATTCAGCCCTTCGCTGGAACA
TATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGG

MXO02441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6570-PA 1119 lbl-RA 1..703 9..711 3515 100 Plus
CG6545-PA 1440 lbe-RA 755..842 460..547 315 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1758 CG6570-RB 167..944 9..786 3875 99.9 Plus
lbl-RC 1803 CG6570-RC 167..869 9..711 3515 100 Plus
lbl-RA 1855 CG6570-RA 167..869 9..711 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21433265..21433967 711..9 3515 100 Minus
3R 32079331 3R 21445093..21445425 703..374 550 78.4 Minus
3R 32079331 3R 21427029..21427104 786..711 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 22:03:39 has no hits.

MXO02441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:43 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-PA 1..703 9..711 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6570-PA 1..703 9..711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:34 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 158..944 1..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:33 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 158..944 1..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:33 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21427029..21427103 712..786 98 <- Minus
3R 21433265..21433973 1..711 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:34 Download gff for MXO02441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17252751..17252825 712..786 98 <- Minus
arm_3R 17258987..17259695 1..711 99   Minus