MXO02441.3prime Sequence
859 bp (717 high quality bases) assembled on 2006-12-21
> MXO02441.3prime
ATGGTCTAGAAAGCTTGCGTCGTGTTGCGTGTAAATAGCAACATCCACAT
CCACAATAACACCAACTTGTGCTTGTTTTTCCAAATCACTGAGTTTTCCA
TTCATTCCCGCATTCGTTATGCCCTTCGTCCCTTTGGATTTGGGCGAAGT
CTCGAATATGTTCCAGCGAAGGGCTGAATGCCTCTTTGATGTACTGACCT
GCTCTTCGTCAAAGTTTTTGGTGGACAGCTGGAAGAGGGCATCCAAGGGA
GTGTCTCCACTTGATTTGCTGGCCCCCTTTGGTTGTTCCTCGGGCGACTT
CTTAGGAACCTCCATTCTGTCCTCTTGGGAACGTTTTTCCACTTTTTCCG
CCTGGGTGGGACTGCAGCATTCGGTGCTGCCATTGCTGCTGCTTGATCGC
TGGGAACGCTCTGAACTGCCGTCCTCGGAGGCAATGATCGCGGGATTCAG
GGTCATCTGCCGGAGGAGTTGCGCCTGTGCCTGGAAGTGCTCCTGGAGCT
GGCGCTGGTAGTCCCAGGCCAGTCGCTGCTCATAGCTGTGGAGCAAAGCG
GGCGATAAAAATGTATGTAGTGCAGCCGGCGGAGGGCAATTCGGCACCAA
GGGTATTTGCAATCTTTCGTTGATCAGAGCCAATGGAGCAGGTACTCCTG
GTAAAGCATTGGGAATGGCAATTCTCTCCGGCTTCTTCTCCACACGATCC
TCTTCATGCCCTCGCCCCAGGATATCGGCAATGGAAAAGCTCTTGACCCT
GACGGGTGATGACTTTTGGCGGTCATGTTCCAGGCTAATAGGACTCCTCA
AAAGCCGCAATCGTTTCATATTCAACGATCTCAGAGGCGGTGGACTGGGC
GACCCACCG
MXO02441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 49..703 | 852..198 | 3275 | 100 | Minus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 449..362 | 315 | 94.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 207..1048 | 859..19 | 4185 | 99.9 | Minus |
lbl-RC | 1803 | CG6570-RC | 207..869 | 859..198 | 3290 | 99.8 | Minus |
lbl-RA | 1855 | CG6570-RA | 207..869 | 859..198 | 3290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433919 | 198..852 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 21426925..21427104 | 19..198 | 900 | 100 | Plus |
3R | 32079331 | 3R | 21445093..21445425 | 206..535 | 550 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:14 has no hits.
MXO02441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:41 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 41..703 | 198..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 41..703 | 198..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:36 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 207..1048 | 19..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:43 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 207..1048 | 19..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:43 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21426925..21427103 | 19..197 | 100 | <- | Plus |
3R | 21433265..21433927 | 198..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:36 Download gff for
MXO02441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252647..17252825 | 19..197 | 100 | <- | Plus |
arm_3R | 17258987..17259649 | 198..859 | 99 | | Plus |
MXO02441.5prime Sequence
786 bp (700 high quality bases) assembled on 2006-12-21
> MXO02441.5prime
CAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCTAACTCTGATGTTTCG
GTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTTGAATATGAAACGATT
GCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATGACCGCCAAAAGTCAT
CACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGATATCCTGGGGCGAGGG
CATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAGAATTGCCATTCCCAA
TGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGATCAACGAAAGATTGC
AAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCTGCACTACATACATTT
TTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCGACTGGCCTGGGACTA
CCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGGCGCAACTCCTCCGGC
AGATGACCCTGAATCCCGCGATCATTGCCTCCGAGGACGGCAGTTCAGAG
CGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCACCGAATGCTGCAGTCC
CACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAGAGGACAGAATGGAGG
TTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGGGCCAGCAAATCAAGT
GGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTCCACCAAAAACTTTGA
CGAAGAGCAGGTCAGTACATCGAAGAGGCATTCAGCCCTTCGCTGGAACA
TATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGG
MXO02441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6570-PA | 1119 | lbl-RA | 1..703 | 9..711 | 3515 | 100 | Plus |
CG6545-PA | 1440 | lbe-RA | 755..842 | 460..547 | 315 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lbl-RB | 1758 | CG6570-RB | 167..944 | 9..786 | 3875 | 99.9 | Plus |
lbl-RC | 1803 | CG6570-RC | 167..869 | 9..711 | 3515 | 100 | Plus |
lbl-RA | 1855 | CG6570-RA | 167..869 | 9..711 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21433265..21433967 | 711..9 | 3515 | 100 | Minus |
3R | 32079331 | 3R | 21445093..21445425 | 703..374 | 550 | 78.4 | Minus |
3R | 32079331 | 3R | 21427029..21427104 | 786..711 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:39 has no hits.
MXO02441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:43 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-PA | 1..703 | 9..711 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6570-PA | 1..703 | 9..711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:34 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 158..944 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:33 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lbl-RB | 158..944 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:33 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21427029..21427103 | 712..786 | 98 | <- | Minus |
3R | 21433265..21433973 | 1..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:34 Download gff for
MXO02441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17252751..17252825 | 712..786 | 98 | <- | Minus |
arm_3R | 17258987..17259695 | 1..711 | 99 | | Minus |