Clone MXO02442 Report

Search the DGRC for MXO02442

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:42
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8117-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02442.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-12-21

> MXO02442.3prime
ATGGTCTAGAAAGCTTGCGCTCTTCCAGCGGTTGCCGCACTCGTCGCATA
TCACAAAGGTGATAATGGGCTCGTCACCATCACGGATATGCAATTGGCTG
CAGTTGCGTTTGTCGCAGCGTTCGCATTTGAACTGATCCGTCTTGGTGCC
CTGAACCTTGGCCATCTGTGCCGCATTGATCGAGTCCTGAACGTACTTCT
GGCGCATCTGCTTCATATCATCGCTGGCCATCTCCTCGGGCGTCATCTTG
GATAACTCTTCGGGCGTTATTTGACCTAATAGGAACTTCTGGCGCAGCTC
TGGATTCTTCGGATCGCGCAAGTTGGCCAAACGCGAACGTATGCGATTTT
TGTACTTCACCTTGCAGCCGTTCAAGTCGCCGTAAATTGCGTCCTCCAGT
TTAGCGGCCATGTCATCCGGATCGCCACATCCTGGTGGCATGTTGCCCGA
TTTCAATGCGGTTGCCAACATCTCGCGGCACTTGATGCGTATTTCCATGG
ACATGTCGAC

MXO02442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-PA 489 CG8117-RA 1..486 504..19 2430 100 Minus
CG3710-PA 942 TfIIS-RA 703..754 246..195 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..555 505..19 2435 100 Minus
TfIIS-RB 1773 CG3710-RB 957..1192 251..22 275 75.5 Minus
TfIIS-RA 1401 CG3710-RA 957..1192 251..22 275 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644776 505..19 2435 100 Minus
2L 23513712 2L 15059619..15059735 135..251 270 82.1 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:31 has no hits.

MXO02442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:44 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 18..504 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 18..504 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:15 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 64..555 19..510 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:34 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 64..555 19..510 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:34 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15644285..15644776 19..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:15 Download gff for MXO02442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538318..15538809 19..510 99   Minus

MXO02442.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-12-21

> MXO02442.5prime
CAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGATGTTGGCA
ACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGATCCGGATGA
CATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAACGGCTGCA
AGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACTTGCGCGAT
CCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAAATAACGCC
CGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGATGATATGA
AGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGGCACAGATG
GCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAACGCTGCGA
CAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGAGCCCATTA
TCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGAGCGCAAGC
TTTCTAGACC

MXO02442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-PA 489 CG8117-RA 1..486 9..494 2430 100 Plus
CG3710-PA 942 TfIIS-RA 703..754 267..318 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..555 8..494 2435 100 Plus
TfIIS-RB 1773 CG3710-RB 957..1192 262..491 275 75.5 Plus
TfIIS-RA 1401 CG3710-RA 957..1192 262..491 275 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644776 8..494 2435 100 Plus
2L 23513712 2L 15059619..15059735 378..262 270 82.1 Minus
Blast to na_te.dros performed on 2014-11-28 21:59:26 has no hits.

MXO02442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:46 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 9..495 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:43 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-PA 1..489 9..495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:11 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 65..555 1..494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:39 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 65..555 1..494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:39 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15644286..15644776 1..494 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:11 Download gff for MXO02442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538319..15538809 1..494 99   Plus