Clone Sequence Records
MXO02442.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-12-21
> MXO02442.3prime
ATGGTCTAGAAAGCTTGCGCTCTTCCAGCGGTTGCCGCACTCGTCGCATA
TCACAAAGGTGATAATGGGCTCGTCACCATCACGGATATGCAATTGGCTG
CAGTTGCGTTTGTCGCAGCGTTCGCATTTGAACTGATCCGTCTTGGTGCC
CTGAACCTTGGCCATCTGTGCCGCATTGATCGAGTCCTGAACGTACTTCT
GGCGCATCTGCTTCATATCATCGCTGGCCATCTCCTCGGGCGTCATCTTG
GATAACTCTTCGGGCGTTATTTGACCTAATAGGAACTTCTGGCGCAGCTC
TGGATTCTTCGGATCGCGCAAGTTGGCCAAACGCGAACGTATGCGATTTT
TGTACTTCACCTTGCAGCCGTTCAAGTCGCCGTAAATTGCGTCCTCCAGT
TTAGCGGCCATGTCATCCGGATCGCCACATCCTGGTGGCATGTTGCCCGA
TTTCAATGCGGTTGCCAACATCTCGCGGCACTTGATGCGTATTTCCATGG
ACATGTCGAC
MXO02442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-PA | 489 | CG8117-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
CG3710-PA | 942 | TfIIS-RA | 703..754 | 246..195 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..555 | 505..19 | 2435 | 100 | Minus |
TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 251..22 | 275 | 75.5 | Minus |
TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 251..22 | 275 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644776 | 505..19 | 2435 | 100 | Minus |
2L | 23513712 | 2L | 15059619..15059735 | 135..251 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:31 has no hits.
MXO02442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:44 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:42 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:15 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 64..555 | 19..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:34 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 64..555 | 19..510 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:34 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644285..15644776 | 19..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:15 Download gff for
MXO02442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538318..15538809 | 19..510 | 99 | | Minus |
MXO02442.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-12-21
> MXO02442.5prime
CAGTCGACATGTCCATGGAAATACGCATCAAGTGCCGCGAGATGTTGGCA
ACCGCATTGAAATCGGGCAACATGCCACCAGGATGTGGCGATCCGGATGA
CATGGCCGCTAAACTGGAGGACGCAATTTACGGCGACTTGAACGGCTGCA
AGGTGAAGTACAAAAATCGCATACGTTCGCGTTTGGCCAACTTGCGCGAT
CCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATTAGGTCAAATAACGCC
CGAAGAGTTATCCAAGATGACGCCCGAGGAGATGGCCAGCGATGATATGA
AGCAGATGCGCCAGAAGTACGTTCAGGACTCGATCAATGCGGCACAGATG
GCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAAATGCGAACGCTGCGA
CAAACGCAACTGCAGCCAATTGCATATCCGTGATGGTGACGAGCCCATTA
TCACCTTTGTGATATGCGACGAGTGCGGCAACCGCTGGAAGAGCGCAAGC
TTTCTAGACC
MXO02442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-PA | 489 | CG8117-RA | 1..486 | 9..494 | 2430 | 100 | Plus |
CG3710-PA | 942 | TfIIS-RA | 703..754 | 267..318 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..555 | 8..494 | 2435 | 100 | Plus |
TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 262..491 | 275 | 75.5 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 262..491 | 275 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644776 | 8..494 | 2435 | 100 | Plus |
2L | 23513712 | 2L | 15059619..15059735 | 378..262 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:26 has no hits.
MXO02442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:46 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:43 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-PA | 1..489 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:11 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:39 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 65..555 | 1..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:39 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644286..15644776 | 1..494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:11 Download gff for
MXO02442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538319..15538809 | 1..494 | 99 | | Plus |