MXO02443.3prime Sequence
639 bp (639 high quality bases) assembled on 2006-12-21
> MXO02443.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCAGACGTTCTCCTCGTCCTCGC
TGTCGTCCTCCATCTTGGTCACATCGATGGTGGTCAACAGGGAATGGCTG
GTCGAACTGGTATTGGAGTTGGGACTGCCGGCGTAGCTGGAGATTGGCGA
AATGGGCACGGAGTAGGCATCCCGATTGGCGATGTGCACGGAGAGTGGAG
CGGTCACCGGCAAGACTTCCTTTTCTGCTGGCTGGATCTGATTGAGGCGC
TGTCCCAGGTGGGTCATTAGCTGAGTGCCTAGGCTGACATTCATGCCGGG
CAGCTGGGAGAGTGAACGGGAGACCTCATTGACGGCATGGATGTAGCCGG
AACGGAAGCCCTCCGCCGGAGTCAAGCTCTCATCGCCGGAAGCCCGCTTG
TGCTGACGCTGCTGCTTCATCTTTTGCAAATGGGTGACGGTAAGTTCCAG
GATATCGGCTTTCTCCAAACGGGTGACGTGCTCGCCCTCGGACTCCAAGG
TGGCAACCATAAGATCCTTTAGCTCGTCCAGGCACTTGTTGATTCTGGCA
CGACGCTTCCTCTCCAGCATGGGCTTCATCACCTTGCGGTACTGATAGGT
CTTGGACATCTCGGACATTTGTAGCGACGACATGTCGAC
MXO02443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8333-PA | 618 | HLHmgamma-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
| CG8361-PA | 561 | HLHm7-RA | 15..116 | 613..512 | 360 | 94.1 | Minus |
| CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 612..515 | 340 | 93.8 | Minus |
| CG8346-PA | 675 | HLHm3-RA | 10..50 | 612..572 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 633..19 | 3075 | 100 | Minus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 612..437 | 460 | 84.7 | Minus |
| E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 613..507 | 430 | 93.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25999943..26000557 | 633..19 | 3075 | 100 | Minus |
| 3R | 32079331 | 3R | 26005703..26005878 | 437..612 | 460 | 84.1 | Plus |
| 3R | 32079331 | 3R | 26022029..26022195 | 612..446 | 430 | 83.8 | Minus |
| 3R | 32079331 | 3R | 26037177..26037283 | 613..507 | 430 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:35 has no hits.
MXO02443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:48 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8333-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:43 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8333-PA | 1..618 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:44 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 87..707 | 19..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:16 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 87..707 | 19..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:16 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25999937..26000556 | 20..639 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:44 Download gff for
MXO02443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21825659..21826278 | 20..639 | 99 | -> | Minus |
MXO02443.5prime Sequence
639 bp (639 high quality bases) assembled on 2006-12-21
> MXO02443.5prime
CAGTCGACATGTCGTCGCTACAAATGTCCGAGATGTCCAAGACCTATCAG
TACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGTGCCAGAAT
CAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCACCTTGGAGT
CCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCCTGGAACTT
ACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCACAAGCGGGC
TTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTCCGGCTACA
TCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGCCCGGCATG
AATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAGCGCCTCAA
TCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGCTCCACTCT
CCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTTCGCCAATC
TCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACCAGCCATTC
CCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAGCGAGGACG
AGGAGAACGTCTGGCGTCCCTGGGCAAGCTTTCTAGACC
MXO02443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8333-PA | 618 | HLHmgamma-RA | 1..615 | 9..623 | 3075 | 100 | Plus |
| CG8361-PA | 561 | HLHm7-RA | 15..116 | 29..130 | 360 | 94.1 | Plus |
| CG14548-PA | 588 | HLHmbeta-RA | 16..113 | 30..127 | 340 | 93.8 | Plus |
| CG8346-PA | 675 | HLHm3-RA | 10..50 | 30..70 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 93..707 | 9..623 | 3075 | 100 | Plus |
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 146..321 | 30..205 | 460 | 84.7 | Plus |
| E(spl)m7-HLH-RA | 982 | CG8361-RA | 140..246 | 29..135 | 430 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25999943..26000557 | 9..623 | 3075 | 100 | Plus |
| 3R | 32079331 | 3R | 26005703..26005878 | 205..30 | 460 | 84.1 | Minus |
| 3R | 32079331 | 3R | 26022029..26022195 | 30..196 | 430 | 83.8 | Plus |
| 3R | 32079331 | 3R | 26037177..26037283 | 29..135 | 430 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:23 has no hits.
MXO02443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:49 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8333-PA | 1..618 | 9..624 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:43 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8333-PA | 1..618 | 9..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:31 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 85..707 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:17 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mgamma-HLH-RA | 85..707 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:17 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25999935..26000556 | 1..622 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:31 Download gff for
MXO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21825657..21826278 | 1..622 | 99 | -> | Plus |
