Clone MXO02445 Report

Search the DGRC for MXO02445

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:45
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHLHm7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02445.3prime Sequence

582 bp (582 high quality bases) assembled on 2006-12-21

> MXO02445.3prime
ATGGTCTAGAAAGCTTGCCCAGGGACGCCACACCTGTCCGGGGCTGCTGA
TCTGGAGCAGAGACTCGTTGTCGCTGGCATATCCACTGGAAACGGGACTG
ATGGAGGAGCAGGAGCTGGCACTGGAGTAGGTGCTGGAGCTAGAGCTGGA
TCCACAGACGATACTGAGTGGAGTGTTGACGGCTTGCGGTTGTTCCATGG
GCTGCTCCAGTTGGTTGAGACGCATGCCCAGATGGGTCATCAGTGTGGTT
CCAAAAGCCACATCCACTCGGGGAAGGGAGGCCAGGGCGCGGGACACTTC
GTTGGCTGCCCGGATGTATCCAGCACGGAAACTCTGTTCGGGATTGGCCG
GAACATGCTTCTTAGACTCTTTCAGCTTGCGGAGATGCTGCACGGTGACT
TCCAGGATGTCGGCCTTCTCGAATTTGGCATCGCCAGTCTGAGCAACGCA
CTCGGCCATCAGATCCTTGAGCTCGTCCAGGCACTTGTTGATCCTGGCAC
GACGCTTCCGCTCCAGCAAGGGCTTCATCACCTTGCGGTACTGATAGGTT
TTCGACATCTCGTATTTGGTGGCCATGTCGAC

MXO02445.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..558 576..19 2790 100 Minus
CG8333-PA 618 HLHmgamma-RA 21..122 562..461 360 94.1 Minus
CG14548-PA 588 HLHmbeta-RA 16..113 561..464 340 93.8 Minus
CG8346-PA 675 HLHm3-RA 25..115 546..456 255 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..683 576..19 2790 100 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 562..456 430 93.5 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 561..448 405 90.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037720 576..19 2790 100 Minus
3R 32079331 3R 25999963..26000069 562..456 430 93.5 Minus
3R 32079331 3R 26005765..26005878 448..561 405 90.4 Plus
3R 32079331 3R 26022029..26022142 561..448 375 88.6 Minus
Blast to na_te.dros performed on 2014-11-28 21:08:17 has no hits.

MXO02445.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:55 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 15..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:45 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 15..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:01 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 15..582 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:43 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 15..582 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:43 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037719 20..582 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:01 Download gff for MXO02445.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863441 20..582 99 -> Minus

MXO02445.5prime Sequence

582 bp (582 high quality bases) assembled on 2006-12-21

> MXO02445.5prime
CAGTCGACATGGCCACCAAATACGAGATGTCGAAAACCTATCAGTACCGC
AAGGTGATGAAGCCCTTGCTGGAGCGGAAGCGTCGTGCCAGGATCAACAA
GTGCCTGGACGAGCTCAAGGATCTGATGGCCGAGTGCGTTGCTCAGACTG
GCGATGCCAAATTCGAGAAGGCCGACATCCTGGAAGTCACCGTGCAGCAT
CTCCGCAAGCTGAAAGAGTCTAAGAAGCATGTTCCGGCCAATCCCGAACA
GAGTTTCCGTGCTGGATACATCCGGGCAGCCAACGAAGTGTCCCGCGCCC
TGGCCTCCCTTCCCCGAGTGGATGTGGCTTTTGGAACCACACTGATGACC
CATCTGGGCATGCGTCTCAACCAACTGGAGCAGCCCATGGAACAACCGCA
AGCCGTCAACACTCCACTCAGTATCGTCTGTGGATCCAGCTCTAGCTCCA
GCACCTACTCCAGTGCCAGCTCCTGCTCCTCCATCAGTCCCGTTTCCAGT
GGATATGCCAGCGACAACGAGTCTCTGCTCCAGATCAGCAGCCCCGGACA
GGTGTGGCGTCCCTGGGCAAGCTTTCTAGACC

MXO02445.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8361-PA 561 HLHm7-RA 1..558 9..566 2790 100 Plus
CG8333-PA 618 HLHmgamma-RA 21..122 23..124 360 94.1 Plus
CG14548-PA 588 HLHmbeta-RA 16..113 24..121 340 93.8 Plus
CG8346-PA 675 HLHm3-RA 25..115 39..129 255 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m7-HLH-RA 982 CG8361-RA 126..683 9..566 2790 100 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 113..219 23..129 430 93.5 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 146..259 24..137 405 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26037163..26037720 9..566 2790 100 Plus
3R 32079331 3R 25999963..26000069 23..129 430 93.5 Plus
3R 32079331 3R 26005765..26005878 137..24 405 90.4 Minus
3R 32079331 3R 26022029..26022142 24..137 375 88.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:45:33 has no hits.

MXO02445.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:27:56 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm7-PA 1..561 9..570 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:45 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8361-PA 1..561 9..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:12 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 1..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:24 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m7-HLH-RA 120..686 1..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:24 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26037157..26037719 1..565 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:12 Download gff for MXO02445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21862879..21863441 1..565 99 -> Plus