Clone MXO02447 Report

Search the DGRC for MXO02447

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:47
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptsage-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02447.3prime Sequence

828 bp (725 high quality bases) assembled on 2006-12-21

> MXO02447.3prime
ATGGTCTAGAAAGCTTGCCGCTCCCCAATGATCGTTGCCATTATCATAAG
GTGAACTACTTCCGCCGCTCCAGGCACAGCATCCATTGCCATTTTGACCC
ACGGAGCTCTCCCGCAGCATGGCCTGCAGGTGATTAATGTAGTTGATGGC
AATCCTCAAACTCTCGATTTTGGAGTACTTTTTCCCATTTGGCTTGGATA
TGGGTAGCTTGGAGCGCAGTAAGTCAAAGGCTCGGTTCATGTCCCGCATC
CTGGTTCTTTCCCGATCGCAGGCGGTGCGTCTATAGTCCTTCTCCATTTG
CAGCGCCTTCTCCCGCCAGGCGGGATTGTGCTCTTTGGCGATGTCCACCT
CAGTGCTATTGGCTATACTACCGCCGCTATAGCTCATATACATGGGCGGA
GGTACCAGCTCACTGGGTTTGTTGCATTCCAAGCCCACTGGCGAACCGGT
GGCCACCTGGCCAGCATGCCACATCGACACCGGCTGAGGTATAACGCTAT
ATGTGGGTGGCAACAGACCCATATTGTGCGCTTCCTTCTCGTAGCCACCC
ATCACGCTGGGTGAGTAGCTATGCGGATGAGTTGGCGCATATGCCAGCAA
GCCTGCTCCATCCGCGGTTAGGGTGTAGTTGAGACTAACTGCCGGACAAC
TGGACGATTGAGGGGCACCGAGCTCTAGAAGAACGGGCTGTTCCGATGAT
TCCGCCTCGCCCTCGGATCCACCGCTCAAATAGGGTCCACCGGTGGTGGC
TGATACGGGCACCAAAACTGGCGGTGGATCACCCGGTACGCCGGCCGTGG
AGCTCAACAGTTGATCCGTCATGTCGAC

MXO02447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12952-PA 807 sage-RA 1..804 822..19 3995 99.8 Minus
CG12952-PB 537 sage-RB 1..534 552..19 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
sage-RC 1428 CG12952-RC 401..1204 822..19 4005 99.9 Minus
sage-RA 1105 CG12952-RA 78..881 822..19 4005 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9263074..9263742 154..822 3330 99.9 Plus
3R 32079331 3R 9262878..9263015 19..156 690 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:08:49 has no hits.

MXO02447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:01 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
sage-PA 1..807 15..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:46 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12952-PA 1..807 15..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:27 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
sage-RA 75..887 11..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:02 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
sage-RA 75..887 11..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:02 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9262872..9263013 11..154 97 <- Plus
3R 9263075..9263745 155..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:27 Download gff for MXO02447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5088594..5088735 11..154 97 <- Plus
arm_3R 5088797..5089467 155..828 99   Plus

MXO02447.5prime Sequence

828 bp (801 high quality bases) assembled on 2006-12-21

> MXO02447.5prime
CAGTCGACATGACGGATCAACTGCTCATCTCCACGGCCGGCGTACCGGGT
GATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGTGGACCCTA
TTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACAGCCCGTTC
TTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAGTTAGTCTC
AACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATATGCGCCAAC
TCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGAGAAGGAAG
CGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATACCTCAGCCG
GTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCAGTGGGCTT
GGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTATATGAGCT
ATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCGCCAAAGAG
CACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAGGACTATAG
ACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACATGAACCGAG
CCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAAATGGGAAA
AAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTACATTAATCA
CCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGGCAATGGAT
GCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATGGCAACGAT
CATTGGGGAGCGGGCAGCTTTCTAGACC

MXO02447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12952-PA 807 sage-RA 1..804 9..812 3970 99.7 Plus
CG12952-PB 537 sage-RB 1..534 279..812 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
sage-RC 1428 CG12952-RC 401..1204 9..812 3990 99.8 Plus
sage-RA 1105 CG12952-RA 78..881 9..812 3990 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9263074..9263742 677..9 3315 99.7 Minus
3R 32079331 3R 9262878..9263015 812..675 690 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:00:46 has no hits.

MXO02447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:03 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
sage-PA 1..807 9..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:47 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12952-PA 1..807 9..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:40 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
sage-RA 73..887 1..820 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:06 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
sage-RA 73..887 1..820 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:06 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9262872..9263013 677..820 97 <- Minus
3R 9263075..9263746 1..676 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:40 Download gff for MXO02447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5088594..5088735 677..820 97 <- Minus
arm_3R 5088797..5089468 1..676 99   Minus