Clone Sequence Records
MXO02447.3prime Sequence
828 bp (725 high quality bases) assembled on 2006-12-21
> MXO02447.3prime
ATGGTCTAGAAAGCTTGCCGCTCCCCAATGATCGTTGCCATTATCATAAG
GTGAACTACTTCCGCCGCTCCAGGCACAGCATCCATTGCCATTTTGACCC
ACGGAGCTCTCCCGCAGCATGGCCTGCAGGTGATTAATGTAGTTGATGGC
AATCCTCAAACTCTCGATTTTGGAGTACTTTTTCCCATTTGGCTTGGATA
TGGGTAGCTTGGAGCGCAGTAAGTCAAAGGCTCGGTTCATGTCCCGCATC
CTGGTTCTTTCCCGATCGCAGGCGGTGCGTCTATAGTCCTTCTCCATTTG
CAGCGCCTTCTCCCGCCAGGCGGGATTGTGCTCTTTGGCGATGTCCACCT
CAGTGCTATTGGCTATACTACCGCCGCTATAGCTCATATACATGGGCGGA
GGTACCAGCTCACTGGGTTTGTTGCATTCCAAGCCCACTGGCGAACCGGT
GGCCACCTGGCCAGCATGCCACATCGACACCGGCTGAGGTATAACGCTAT
ATGTGGGTGGCAACAGACCCATATTGTGCGCTTCCTTCTCGTAGCCACCC
ATCACGCTGGGTGAGTAGCTATGCGGATGAGTTGGCGCATATGCCAGCAA
GCCTGCTCCATCCGCGGTTAGGGTGTAGTTGAGACTAACTGCCGGACAAC
TGGACGATTGAGGGGCACCGAGCTCTAGAAGAACGGGCTGTTCCGATGAT
TCCGCCTCGCCCTCGGATCCACCGCTCAAATAGGGTCCACCGGTGGTGGC
TGATACGGGCACCAAAACTGGCGGTGGATCACCCGGTACGCCGGCCGTGG
AGCTCAACAGTTGATCCGTCATGTCGAC
MXO02447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12952-PA | 807 | sage-RA | 1..804 | 822..19 | 3995 | 99.8 | Minus |
CG12952-PB | 537 | sage-RB | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sage-RC | 1428 | CG12952-RC | 401..1204 | 822..19 | 4005 | 99.9 | Minus |
sage-RA | 1105 | CG12952-RA | 78..881 | 822..19 | 4005 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9263074..9263742 | 154..822 | 3330 | 99.9 | Plus |
3R | 32079331 | 3R | 9262878..9263015 | 19..156 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:08:49 has no hits.
MXO02447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:01 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-PA | 1..807 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:46 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12952-PA | 1..807 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:27 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-RA | 75..887 | 11..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:02 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-RA | 75..887 | 11..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:02 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9262872..9263013 | 11..154 | 97 | <- | Plus |
3R | 9263075..9263745 | 155..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:27 Download gff for
MXO02447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5088594..5088735 | 11..154 | 97 | <- | Plus |
arm_3R | 5088797..5089467 | 155..828 | 99 | | Plus |
MXO02447.5prime Sequence
828 bp (801 high quality bases) assembled on 2006-12-21
> MXO02447.5prime
CAGTCGACATGACGGATCAACTGCTCATCTCCACGGCCGGCGTACCGGGT
GATCCACCGCCAGTTTTGGTGCCCGTATCAGCCACCACCGGTGGACCCTA
TTTGAGCGGTGGATCCGAGGGCGAGGCGGAATCATCGGAACAGCCCGTTC
TTCTAGAGCTCGGTGCCCCTCAATCGTCCAGTTGTCCGGCAGTTAGTCTC
AACTACACCCTAACCGCGGATGGAGCAGGCTTGCTGGCATATGCGCCAAC
TCATCCGCATAGCTACTCACCCAGCGTGATGGGTGGCTACGAGAAGGAAG
CGCACAATATGGGTCTGTTGCCACCCACATATAGCGTTATACCTCAGCCG
GTGTCGATGTGGCATGCTGGCCAGGTGGCCACCGGTTCGCCAGTGGGCTT
GGAATGCAACAAACCCAGTGAGCTGGTACCTCCGCCCATGTATATGAGCT
ATAGCGGCGGTAGTATAGCCAATAGCACTGAGGTGGACATCGCCAAAGAG
CACAATCCCGCCTGGCGGGAGAAGGCGCTGCAAATGGAGAAGGACTATAG
ACGCACCGCCTGCGATCGGGAAAGAACCAGGATGCGGGACATGAACCGAG
CCTTTGACTTACTGCGCTCCAAGCTACCCATATCCAAGCCAAATGGGAAA
AAGTACTCCAAAATCGAGAGTTTGAGGATTGCCATCAACTACATTAATCA
CCTGCAGGCCATGCTGCGGGAGAGCTCCGTGGGTCAAAATGGCAATGGAT
GCTGTGCCTGGAGCGGCGGAAGTAGTTCACCTTATGATAATGGCAACGAT
CATTGGGGAGCGGGCAGCTTTCTAGACC
MXO02447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12952-PA | 807 | sage-RA | 1..804 | 9..812 | 3970 | 99.7 | Plus |
CG12952-PB | 537 | sage-RB | 1..534 | 279..812 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sage-RC | 1428 | CG12952-RC | 401..1204 | 9..812 | 3990 | 99.8 | Plus |
sage-RA | 1105 | CG12952-RA | 78..881 | 9..812 | 3990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9263074..9263742 | 677..9 | 3315 | 99.7 | Minus |
3R | 32079331 | 3R | 9262878..9263015 | 812..675 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:46 has no hits.
MXO02447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:03 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-PA | 1..807 | 9..816 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:47 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12952-PA | 1..807 | 9..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:40 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-RA | 73..887 | 1..820 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:06 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sage-RA | 73..887 | 1..820 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:06 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9262872..9263013 | 677..820 | 97 | <- | Minus |
3R | 9263075..9263746 | 1..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:40 Download gff for
MXO02447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5088594..5088735 | 677..820 | 97 | <- | Minus |
arm_3R | 5088797..5089468 | 1..676 | 99 | | Minus |