MXO02448.3prime Sequence
833 bp (781 high quality bases) assembled on 2006-12-21
> MXO02448.3prime
ATGGTCTAGAAAGCTTGCAACTTCCTGACACAAAAGGTCGAATTGCGACT
GCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCAG
GTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGGT
GACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCGA
GATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTTC
CTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGGT
GAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGGA
CCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCAG
TAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTGC
CTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGAT
ATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTTA
TTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGGG
TAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCCT
CCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCACC
GGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTACT
CTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGCC
CCCTTCGCCGCTTGGTCGTTTTCTTTCTTGGTG
MXO02448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 304..1110 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 366..1178 | 832..19 | 4045 | 99.9 | Minus |
CG8145-RC | 1862 | CG8145-RC | 366..1178 | 832..19 | 4045 | 99.9 | Minus |
CG8145-RA | 1217 | CG8145-RA | 366..1178 | 832..19 | 4045 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723616..8723951 | 825..490 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 8724134..8724382 | 490..242 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 8724448..8724673 | 244..19 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:24 has no hits.
MXO02448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:05 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 296..1113 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:47 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 296..1113 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:07 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 364..1181 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:28 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 364..1181 | 15..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:28 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8723608..8723950 | 491..833 | 99 | -> | Minus |
3R | 8724134..8724382 | 242..490 | 100 | -> | Minus |
3R | 8724451..8724676 | 15..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:07 Download gff for
MXO02448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4550173..4550398 | 15..241 | 99 | | Minus |
arm_3R | 4549330..4549672 | 491..833 | 99 | -> | Minus |
arm_3R | 4549856..4550104 | 242..490 | 100 | -> | Minus |
MXO02448.5prime Sequence
779 bp (777 high quality bases) assembled on 2006-12-21
> MXO02448.5prime
CAGTCGACTTAAACCGAAAACGTGACATGTTAATAAATGTGTGCCGAGTT
TGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTCAAACCTGG
CAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAATTCTCCTTC
AGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCCAGACAGAT
CTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAGCAGAAGAA
ATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGAGGAAAAGA
AGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCAAGCGGCGA
AGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTCGTAACGAA
CGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGAATTTGATC
AGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCGATGTTAAT
CTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCGGATCACGA
TTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAATTATCAAAA
ATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATGGAATAAGA
CCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCGAGTGAGCT
GAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTTCGCCTGTC
GCTACTGCGATCGTCGCTACTTCTCCGTG
MXO02448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-PA | 1113 | CG8145-RA | 1..753 | 27..779 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8145-RB | 1553 | CG8145-RB | 51..821 | 9..779 | 3840 | 99.9 | Plus |
CG8145-RC | 1862 | CG8145-RC | 51..821 | 9..779 | 3840 | 99.9 | Plus |
CG8145-RA | 1217 | CG8145-RA | 51..821 | 9..779 | 3840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8723433..8723951 | 147..665 | 2595 | 100 | Plus |
3R | 32079331 | 3R | 8723224..8723361 | 9..146 | 675 | 99.3 | Plus |
3R | 32079331 | 3R | 8724134..8724248 | 665..779 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:17 has no hits.
MXO02448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:06 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..753 | 27..779 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-PA | 1..753 | 27..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:27 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 44..821 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:25 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8145-RA | 44..821 | 1..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:25 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8723217..8723361 | 1..146 | 96 | -> | Plus |
3R | 8723433..8723950 | 147..664 | 100 | -> | Plus |
3R | 8724134..8724248 | 665..779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:27 Download gff for
MXO02448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4548939..4549083 | 1..146 | 96 | -> | Plus |
arm_3R | 4549155..4549672 | 147..664 | 100 | -> | Plus |
arm_3R | 4549856..4549970 | 665..779 | 100 | | Plus |