Clone MXO02448 Report

Search the DGRC for MXO02448

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:48
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8145-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02448.3prime Sequence

833 bp (781 high quality bases) assembled on 2006-12-21

> MXO02448.3prime
ATGGTCTAGAAAGCTTGCAACTTCCTGACACAAAAGGTCGAATTGCGACT
GCACCAGATCCTCGTCAATGGAAGTGGTCAGTGGAGTGCCTTGGGACCAG
GTTTCATCCGATTCAAAACTGAGCATGGACATGTACTCCGACGACGAGGT
GACGGCTTCAGCATTCCGCTTGTGGGTATTGGAGATGAAGTGCGTAGCGA
GATGTTTCTTCAGGCTGAACGAACGATCGCAGACATCGCAACTATACTTC
CTTACAACTTGGTGGACCGCCATGTGGGCCTTCAGAATGCAGGTCCTGGT
GAAGGCCTTGCCGCACTGATCGCACACAAATGGTCGCTCGTTGGTGTGGA
CCCGCTCGTGCTTCTTCCTGCCCACCACGGAGAAGTAGCGACGATCGCAG
TAGCGACAGGCGAACGGGGGCTCCAAGGTGTGATGGGTGAGATTGTGTGC
CTTCAGCTCACTCGCTACCAGAAAGGTCTTTGGGCACTCCTTGCAGGGAT
ATGGTCTTATTCCATTATGTTCAAACTGATGCCTGACCAGAGATGATTTA
TTATTTTTGATAATTCCACAAGTATCGCACTTGTGGATTTGAACATTGGG
TAAATCGTGATCCGACTCCAAGCCATCCTCATCCGGAAGATCTATTTCCT
CCAGATTAACATCGCTATCGGTGGCATCCGGTTCATTGGAGATCTCCACC
GGCTGATCAAATTCATCACCACCAACTGATTCACCTGCTGAAGCCTTACT
CTCGTTCGTTACGACTATATCTACAATTTCCAGTGGCATCCTGGGTCGCC
CCCTTCGCCGCTTGGTCGTTTTCTTTCTTGGTG

MXO02448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 304..1110 825..19 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 366..1178 832..19 4045 99.9 Minus
CG8145-RC 1862 CG8145-RC 366..1178 832..19 4045 99.9 Minus
CG8145-RA 1217 CG8145-RA 366..1178 832..19 4045 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723616..8723951 825..490 1680 100 Minus
3R 32079331 3R 8724134..8724382 490..242 1245 100 Minus
3R 32079331 3R 8724448..8724673 244..19 1130 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:24 has no hits.

MXO02448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:05 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 296..1113 15..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:47 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 296..1113 15..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:07 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 364..1181 15..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:28 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 364..1181 15..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:28 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8723608..8723950 491..833 99 -> Minus
3R 8724134..8724382 242..490 100 -> Minus
3R 8724451..8724676 15..241 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:07 Download gff for MXO02448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4550173..4550398 15..241 99   Minus
arm_3R 4549330..4549672 491..833 99 -> Minus
arm_3R 4549856..4550104 242..490 100 -> Minus

MXO02448.5prime Sequence

779 bp (777 high quality bases) assembled on 2006-12-21

> MXO02448.5prime
CAGTCGACTTAAACCGAAAACGTGACATGTTAATAAATGTGTGCCGAGTT
TGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTCAAACCTGG
CAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAATTCTCCTTC
AGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCCAGACAGAT
CTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAGCAGAAGAA
ATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGAGGAAAAGA
AGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCAAGCGGCGA
AGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTCGTAACGAA
CGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGAATTTGATC
AGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCGATGTTAAT
CTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCGGATCACGA
TTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAATTATCAAAA
ATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATGGAATAAGA
CCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCGAGTGAGCT
GAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTTCGCCTGTC
GCTACTGCGATCGTCGCTACTTCTCCGTG

MXO02448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-PA 1113 CG8145-RA 1..753 27..779 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8145-RB 1553 CG8145-RB 51..821 9..779 3840 99.9 Plus
CG8145-RC 1862 CG8145-RC 51..821 9..779 3840 99.9 Plus
CG8145-RA 1217 CG8145-RA 51..821 9..779 3840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8723433..8723951 147..665 2595 100 Plus
3R 32079331 3R 8723224..8723361 9..146 675 99.3 Plus
3R 32079331 3R 8724134..8724248 665..779 575 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:17 has no hits.

MXO02448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:06 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..753 27..779 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-PA 1..753 27..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:27 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 44..821 1..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:25 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8145-RA 44..821 1..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:25 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8723217..8723361 1..146 96 -> Plus
3R 8723433..8723950 147..664 100 -> Plus
3R 8724134..8724248 665..779 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:27 Download gff for MXO02448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4548939..4549083 1..146 96 -> Plus
arm_3R 4549155..4549672 147..664 100 -> Plus
arm_3R 4549856..4549970 665..779 100   Plus