Clone MXO02449 Report

Search the DGRC for MXO02449

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:49
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31441-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02449.3prime Sequence

833 bp (831 high quality bases) assembled on 2006-12-21

> MXO02449.3prime
ATGGTCTAGAAAGCTTGCGACAATCCTAGCACTTTCAGCTCTTCGCTGGT
GTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCAC
TGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCTC
ATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGGC
ACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACTG
CTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGGC
GTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTACT
TGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTGC
AGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGTC
ACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCAC
TTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTGC
TCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCATT
CTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCTT
CCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATCC
GTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGAG
TTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCCA
TAAAAGACTTGTGGACCTCCAAGCACTTATTGC

MXO02449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 209..1023 833..19 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RB 1223 CG31441-RB 284..1098 833..19 4075 100 Minus
CG31441-RA 1219 CG31441-RA 280..1094 833..19 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236626..11237340 833..119 3575 100 Minus
3R 32079331 3R 11237400..11237499 118..19 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:56 has no hits.

MXO02449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:08 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 209..1026 18..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 209..1026 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:24 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 280..1094 19..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:37 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 280..1094 19..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:37 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236626..11237340 119..833 100 -> Minus
3R 11237400..11237503 15..118 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:24 Download gff for MXO02449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062348..7063062 119..833 100 -> Minus
arm_3R 7063122..7063225 15..118 97 -> Minus

MXO02449.5prime Sequence

915 bp (867 high quality bases) assembled on 2006-12-21

> MXO02449.5prime
CAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTGGCAAAAAT
GTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAAAGCAACTA
TCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCTCGAATTTG
ACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGCAGCTGGAC
AGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAGTCTTTTAT
GGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGATGAGGAAC
TCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGGACCACACG
GATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTTCTGCGGGA
AGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGCGACTCAGA
ATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGGAGGTGGAG
CACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAGGGAGTAAG
TGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTGGTTCTGTG
ACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAACTGCACCTG
CAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGCCAGGCCAA
GTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCACACGGACG
CCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAGGATGCAGC
AGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCCTTTCAGTG
CCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCAAAAACATG
AAATGCTGCACACTA

MXO02449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-PA 1026 CG31441-RA 1..907 9..915 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31441-RA 1219 CG31441-RA 72..978 9..915 4520 99.9 Plus
CG31441-RB 1223 CG31441-RB 72..982 9..915 4470 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11236550..11237324 141..915 3860 99.9 Plus
3R 32079331 3R 11236357..11236488 9..140 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:12:16 has no hits.

MXO02449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:10 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..906 9..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-PA 1..906 9..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:31 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 66..977 1..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:06 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31441-RA 66..977 1..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:06 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11236351..11236488 1..140 97 -> Plus
3R 11236550..11237323 141..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:31 Download gff for MXO02449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7062073..7062210 1..140 97 -> Plus
arm_3R 7062272..7063045 141..914 99   Plus