MXO02449.3prime Sequence
833 bp (831 high quality bases) assembled on 2006-12-21
> MXO02449.3prime
ATGGTCTAGAAAGCTTGCGACAATCCTAGCACTTTCAGCTCTTCGCTGGT
GTAATTTAGTGCTTTGATGTAGGGTCAAATGGGATGAGCGCAGGAACCAC
TGGTCACAGATCTCGCAGTGGTACTTCCGCTGATTAGTGTGCAGCATCTC
ATGTTTTTGACGCGTCGACGTGGAGGTGAAGGCCTTGTCGCAATGCTGGC
ACTGAAAGGGACGCTCGTTGGTGTGGGTCCGCTCGTGGACCACTTTACTG
CTGCATCCTCGGTAGGTCTTGCTACAGAACCGACAAGCGTACGGTCTGGC
GTCCGTGTGAAGGATTCTGTGGCGCCGCATCTCGTTATCCGTGTAGTACT
TGGCCTGGCAGATGTCGCACGCGAACGGTTTGTGACCGCTGTGTCGCTGC
AGGTGCAGTTTGAGGTAGGTAGAGGACTTGAAGACGCCGCCGCACTGGTC
ACAGAACCAGGACTTGGAGTTGCGCTTCGTACGCTTGGGGACACGGGCAC
TTACTCCCTTCGAGATGATGGACATGTTATGGAGCTGCTCTTGACAGTGC
TCCACCTCCTCTGTTTGTACTTGTACTTGTTCCTCCTGATTCTTCTCATT
CTGAGTCGCATCTTCTGCGTCCTTCGCCTTCTCATTATCATTGTGATCTT
CCCGCAGAAGCCCAGCTGTATCTGCCATTGCTACACACATTTCCTGATCC
GTGTGGTCCCACAAATCCTGCTGTAGCTTCTCAACATCCGGTTTATCGAG
TTCCTCATCAACTATCGCCTTTTTTCGCAAAAGTTTCCTGTTAGCGGCCA
TAAAAGACTTGTGGACCTCCAAGCACTTATTGC
MXO02449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 209..1023 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RB | 1223 | CG31441-RB | 284..1098 | 833..19 | 4075 | 100 | Minus |
CG31441-RA | 1219 | CG31441-RA | 280..1094 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236626..11237340 | 833..119 | 3575 | 100 | Minus |
3R | 32079331 | 3R | 11237400..11237499 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:56 has no hits.
MXO02449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:08 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 209..1026 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 209..1026 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:24 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 280..1094 | 19..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:37 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 280..1094 | 19..833 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:37 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236626..11237340 | 119..833 | 100 | -> | Minus |
3R | 11237400..11237503 | 15..118 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:24 Download gff for
MXO02449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062348..7063062 | 119..833 | 100 | -> | Minus |
arm_3R | 7063122..7063225 | 15..118 | 97 | -> | Minus |
MXO02449.5prime Sequence
915 bp (867 high quality bases) assembled on 2006-12-21
> MXO02449.5prime
CAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTGGCAAAAAT
GTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAAAGCAACTA
TCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCTCGAATTTG
ACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGCAGCTGGAC
AGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAGTCTTTTAT
GGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGATGAGGAAC
TCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGGACCACACG
GATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTTCTGCGGGA
AGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGCGACTCAGA
ATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGGAGGTGGAG
CACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAGGGAGTAAG
TGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTGGTTCTGTG
ACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAACTGCACCTG
CAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGCCAGGCCAA
GTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCACACGGACG
CCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAGGATGCAGC
AGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCCTTTCAGTG
CCAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCAAAAACATG
AAATGCTGCACACTA
MXO02449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-PA | 1026 | CG31441-RA | 1..907 | 9..915 | 4510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31441-RA | 1219 | CG31441-RA | 72..978 | 9..915 | 4520 | 99.9 | Plus |
CG31441-RB | 1223 | CG31441-RB | 72..982 | 9..915 | 4470 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11236550..11237324 | 141..915 | 3860 | 99.9 | Plus |
3R | 32079331 | 3R | 11236357..11236488 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:16 has no hits.
MXO02449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:10 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..906 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:48 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-PA | 1..906 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:31 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 66..977 | 1..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:06 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31441-RA | 66..977 | 1..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:06 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11236351..11236488 | 1..140 | 97 | -> | Plus |
3R | 11236550..11237323 | 141..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:31 Download gff for
MXO02449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7062073..7062210 | 1..140 | 97 | -> | Plus |
arm_3R | 7062272..7063045 | 141..914 | 99 | | Plus |