Clone MXO02450 Report

Search the DGRC for MXO02450

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:50
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTrxr-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02450.3prime Sequence

765 bp (709 high quality bases) assembled on 2006-12-21

> MXO02450.3prime
ATGGTCTAGAAAGCTTGCGCCGTAGCAGCTGGCCGGCGTGGGGTCCAGTC
CGGAGCGCTTGGTGATGGCCAGCCGGGTGAATTCTTCGGCGGTAGTGGGA
TGGATGCCCACGGTGTTGATCAGCGTGTTAATAGTCAGGCCAGACTTCAA
AGCGGCAGCGAATCCCTGGATAACCTCACCGGCCACCGGGCCAATATAGT
GCAGTCCATAGACGCGCTGGTCACCATGGCGCTCGGCCACAGCCTTCAAG
TAGCAGTAGCGCACGCTCTTCTGGGGAATGAAGAACTCCGTGGGCTTGTA
GTAGCCGTGGAACACCTCGATCTCATCGGCTCCGAACTGCTTGACGGCAT
CCTCCTCGCTCAGGCCGACGCAGGCGTACTCCAGGGGCGTGAAAACGGTG
GTGGCCACATCCTTGTAGTCCATGCGCTGGGTAGATCCTCCGTACAGGCG
GCGGGCCAGCAAACGGCCAGCCAAAACGGCGACGGGCGTCAGCTCTGGCT
TGCCATAGATGATATCGCCGACAGCGTANATGTTTGCCACATTGGTAGCC
TCCTGGGAGTCCACTGGAATCTTGTCCTTCTGCACAGTCACGCCGGCATT
GGGCAGGTTCAGATCGTCCACCAGACCCTTGCGGCCGATGGCCCACAGAA
CGGTGTCGTAAACATCCTCGGCCTCCTCGTCGGTCTCCACGTTCTTGTAC
TTCACGAGCAGCTTGCCTTCATCCTGCTTTTCCACGGACAGCGGGCCCGT
CTTGCGGAGGAAGGG

MXO02450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 727..1468 765..24 3591 99.3 Minus
CG2151-PB 1791 Trxr-1-RB 1042..1783 765..24 3591 99.3 Minus
CG2151-PC 1527 Trxr-1-RC 778..1519 765..24 3591 99.3 Minus
CG11401-PA 1551 Trxr-2-RA 1246..1307 321..260 235 95.1 Minus
CG11401-PA 1551 Trxr-2-RA 1450..1511 117..56 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RC 2108 CG2151-RC 1020..1761 765..24 3639 99.3 Minus
Trxr-1-RB 2277 CG2151-RB 1189..1930 765..24 3639 99.3 Minus
Trxr-1-RA 2003 CG2151-RA 915..1656 765..24 3639 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246945..8247686 765..24 3639 99.3 Minus
3L 28110227 3L 22551224..22551856 663..31 634 73.3 Minus
Blast to na_te.dros performed on 2014-11-28 21:30:16 has no hits.

MXO02450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:11 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 778..1527 15..765 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:49 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 778..1527 15..765 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:07 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 915..1667 13..765 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:40 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 915..1667 13..765 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:40 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8246945..8247697 13..765 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:07 Download gff for MXO02450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8140978..8141730 13..765 98   Minus

MXO02450.5prime Sequence

831 bp (781 high quality bases) assembled on 2006-12-21

> MXO02450.5prime
CAGTCGACATGGCGCCCGTGCAAGGCTCTTACAACTACGACCTTATTGTG
ATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCAGTCCTCAA
TGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCCCACTCTGG
GCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCTGCATTCCC
AAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTCCATGAGGC
GGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGACTGGCACA
AGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACTGGGTGACC
CGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGACTGGGCTC
CTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGGCGAGCGCA
CAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGACCACGTTAT
CCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGATGATCTGTT
CAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGCTGGCTACA
TTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACGAGCCCACT
GTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAGATGGCCGA
GCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCTCCGCAAGA
CGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGCTCGTGAAG
TACAAGAACGTGGAGACCGGCGAGGAGGCCG

MXO02450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 1..823 9..831 4040 99.6 Plus
CG2151-PB 1791 Trxr-1-RB 341..1138 34..831 3990 100 Plus
CG2151-PC 1527 Trxr-1-RC 77..874 34..831 3990 100 Plus
CG32715-PA 183 CG32715-RA 1..183 245..63 915 100 Minus
CG11401-PA 1551 Trxr-2-RA 206..326 148..268 330 90.9 Plus
CG11401-PA 1551 Trxr-2-RA 373..444 312..383 235 93 Plus
CG11401-PA 1551 Trxr-2-RA 688..752 621..685 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2003 CG2151-RA 189..1011 9..831 4070 99.6 Plus
Trxr-1-RB 2277 CG2151-RB 477..1285 23..831 4000 99.6 Plus
Trxr-1-RC 2108 CG2151-RC 315..1116 30..831 3995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246092..8246446 23..377 1715 98.9 Plus
X 23542271 X 8246808..8247041 598..831 1170 100 Plus
X 23542271 X 8246510..8246736 371..597 1135 100 Plus
3L 28110227 3L 22550417..22550764 36..383 710 81.5 Plus
3L 28110227 3L 22550864..22551129 477..742 490 78.9 Plus
Blast to na_te.dros performed on 2014-11-28 20:52:55 has no hits.

MXO02450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:13 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..823 9..831 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:49 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..823 9..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:02 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1011 9..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:40 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1011 9..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:40 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8246808..8247041 598..831 100   Plus
X 8242716..8242731 9..24 100 -> Plus
X 8246094..8246439 25..370 99 -> Plus
X 8246510..8246736 371..597 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:02 Download gff for MXO02450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136749..8136764 9..24 100 -> Plus
arm_X 8140127..8140472 25..370 99 -> Plus
arm_X 8140543..8140769 371..597 100 -> Plus
arm_X 8140841..8141074 598..831 100   Plus