MXO02450.3prime Sequence
765 bp (709 high quality bases) assembled on 2006-12-21
> MXO02450.3prime
ATGGTCTAGAAAGCTTGCGCCGTAGCAGCTGGCCGGCGTGGGGTCCAGTC
CGGAGCGCTTGGTGATGGCCAGCCGGGTGAATTCTTCGGCGGTAGTGGGA
TGGATGCCCACGGTGTTGATCAGCGTGTTAATAGTCAGGCCAGACTTCAA
AGCGGCAGCGAATCCCTGGATAACCTCACCGGCCACCGGGCCAATATAGT
GCAGTCCATAGACGCGCTGGTCACCATGGCGCTCGGCCACAGCCTTCAAG
TAGCAGTAGCGCACGCTCTTCTGGGGAATGAAGAACTCCGTGGGCTTGTA
GTAGCCGTGGAACACCTCGATCTCATCGGCTCCGAACTGCTTGACGGCAT
CCTCCTCGCTCAGGCCGACGCAGGCGTACTCCAGGGGCGTGAAAACGGTG
GTGGCCACATCCTTGTAGTCCATGCGCTGGGTAGATCCTCCGTACAGGCG
GCGGGCCAGCAAACGGCCAGCCAAAACGGCGACGGGCGTCAGCTCTGGCT
TGCCATAGATGATATCGCCGACAGCGTANATGTTTGCCACATTGGTAGCC
TCCTGGGAGTCCACTGGAATCTTGTCCTTCTGCACAGTCACGCCGGCATT
GGGCAGGTTCAGATCGTCCACCAGACCCTTGCGGCCGATGGCCCACAGAA
CGGTGTCGTAAACATCCTCGGCCTCCTCGTCGGTCTCCACGTTCTTGTAC
TTCACGAGCAGCTTGCCTTCATCCTGCTTTTCCACGGACAGCGGGCCCGT
CTTGCGGAGGAAGGG
MXO02450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2151-PA | 1476 | Trxr-1-RA | 727..1468 | 765..24 | 3591 | 99.3 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 1042..1783 | 765..24 | 3591 | 99.3 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 778..1519 | 765..24 | 3591 | 99.3 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 1246..1307 | 321..260 | 235 | 95.1 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 1450..1511 | 117..56 | 135 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RC | 2108 | CG2151-RC | 1020..1761 | 765..24 | 3639 | 99.3 | Minus |
Trxr-1-RB | 2277 | CG2151-RB | 1189..1930 | 765..24 | 3639 | 99.3 | Minus |
Trxr-1-RA | 2003 | CG2151-RA | 915..1656 | 765..24 | 3639 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8246945..8247686 | 765..24 | 3639 | 99.3 | Minus |
3L | 28110227 | 3L | 22551224..22551856 | 663..31 | 634 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:30:16 has no hits.
MXO02450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:11 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PC | 778..1527 | 15..765 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:49 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PC | 778..1527 | 15..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:07 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 915..1667 | 13..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:40 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 915..1667 | 13..765 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:40 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8246945..8247697 | 13..765 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:07 Download gff for
MXO02450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8140978..8141730 | 13..765 | 98 | | Minus |
MXO02450.5prime Sequence
831 bp (781 high quality bases) assembled on 2006-12-21
> MXO02450.5prime
CAGTCGACATGGCGCCCGTGCAAGGCTCTTACAACTACGACCTTATTGTG
ATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCAGTCCTCAA
TGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCCCACTCTGG
GCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCTGCATTCCC
AAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTCCATGAGGC
GGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGACTGGCACA
AGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACTGGGTGACC
CGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGACTGGGCTC
CTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGGCGAGCGCA
CAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGACCACGTTAT
CCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGATGATCTGTT
CAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGCTGGCTACA
TTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACGAGCCCACT
GTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAGATGGCCGA
GCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCTCCGCAAGA
CGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGCTCGTGAAG
TACAAGAACGTGGAGACCGGCGAGGAGGCCG
MXO02450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2151-PA | 1476 | Trxr-1-RA | 1..823 | 9..831 | 4040 | 99.6 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 341..1138 | 34..831 | 3990 | 100 | Plus |
CG2151-PC | 1527 | Trxr-1-RC | 77..874 | 34..831 | 3990 | 100 | Plus |
CG32715-PA | 183 | CG32715-RA | 1..183 | 245..63 | 915 | 100 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 206..326 | 148..268 | 330 | 90.9 | Plus |
CG11401-PA | 1551 | Trxr-2-RA | 373..444 | 312..383 | 235 | 93 | Plus |
CG11401-PA | 1551 | Trxr-2-RA | 688..752 | 621..685 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RA | 2003 | CG2151-RA | 189..1011 | 9..831 | 4070 | 99.6 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 477..1285 | 23..831 | 4000 | 99.6 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 315..1116 | 30..831 | 3995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8246092..8246446 | 23..377 | 1715 | 98.9 | Plus |
X | 23542271 | X | 8246808..8247041 | 598..831 | 1170 | 100 | Plus |
X | 23542271 | X | 8246510..8246736 | 371..597 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 22550417..22550764 | 36..383 | 710 | 81.5 | Plus |
3L | 28110227 | 3L | 22550864..22551129 | 477..742 | 490 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:55 has no hits.
MXO02450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:13 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PA | 1..823 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:49 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PA | 1..823 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:02 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..1011 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:40 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..1011 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:40 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8246808..8247041 | 598..831 | 100 | | Plus |
X | 8242716..8242731 | 9..24 | 100 | -> | Plus |
X | 8246094..8246439 | 25..370 | 99 | -> | Plus |
X | 8246510..8246736 | 371..597 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:02 Download gff for
MXO02450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8136749..8136764 | 9..24 | 100 | -> | Plus |
arm_X | 8140127..8140472 | 25..370 | 99 | -> | Plus |
arm_X | 8140543..8140769 | 371..597 | 100 | -> | Plus |
arm_X | 8140841..8141074 | 598..831 | 100 | | Plus |