MXO02451.3prime Sequence
843 bp (830 high quality bases) assembled on 2006-12-21
> MXO02451.3prime
ATGGTCTAGAAAGCTTGCAGAAACATACACATTGGCTATCCATTTGAGAA
GATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTGA
ATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCAC
TCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTCA
CTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGCA
GCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCATG
GGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAACT
GCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGTG
AGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCTC
CTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGTA
GCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATGA
TTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTTT
CAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCTA
TCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGGA
TTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAAC
TGGACTTTCAGAAATTAGATACCCAGGTAAATTATTCGCAAAATCCTCGA
GATTACTAATTACAGGTGCCACTTGTTTCTCAGGCATGTCGAC
MXO02451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 1..819 | 837..19 | 4095 | 100 | Minus |
CG5171-PA | 822 | CG5171-RA | 1..819 | 837..19 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..1017 | 837..19 | 4095 | 100 | Minus |
CG5171-RE | 1137 | CG5171-RE | 154..972 | 837..19 | 4095 | 100 | Minus |
CG5171-RD | 1156 | CG5171-RD | 173..991 | 837..19 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 773..148 | 3130 | 100 | Minus |
2L | 23513712 | 2L | 7404230..7404361 | 150..19 | 660 | 100 | Minus |
2L | 23513712 | 2L | 7403297..7403364 | 837..770 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:19 has no hits.
MXO02451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:15 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:50 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 18..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:13 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 143..967 | 19..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:04 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 167..991 | 19..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:04 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403291..7403361 | 773..843 | 95 | -> | Minus |
2L | 7403542..7404163 | 151..772 | 100 | -> | Minus |
2L | 7404230..7404366 | 14..150 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:13 Download gff for
MXO02451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403291..7403361 | 773..843 | 95 | -> | Minus |
arm_2L | 7403542..7404163 | 151..772 | 100 | -> | Minus |
arm_2L | 7404230..7404366 | 14..150 | 97 | -> | Minus |
MXO02451.5prime Sequence
798 bp (700 high quality bases) assembled on 2006-12-21
> MXO02451.5prime
CAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTAATCTCGAG
GATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGTCCAGTTGC
CGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGATAATCCAG
CGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACAAGATAGCC
AAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGACTGAAAGA
TGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGGTAATCATG
GACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACGAGCTACCC
ACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTCAAGGAGAA
GGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTCACTCACCT
ACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAAAGCAGTTG
GCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAGGCCCATGA
AGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGAGGCTGCCG
TGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGAAAGTGAGT
GTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATGAGAGTGCT
TCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCAGATTCAAA
CTTATGCGGATTTCCGGCTGCCCATGCAGGCTGTAATGACCGATCTTC
MXO02451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 1..790 | 9..798 | 3900 | 99.7 | Plus |
CG5171-PA | 822 | CG5171-RA | 1..790 | 9..798 | 3900 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..988 | 9..798 | 3920 | 99.7 | Plus |
CG5171-RE | 1137 | CG5171-RE | 154..943 | 9..798 | 3920 | 99.7 | Plus |
CG5171-RD | 1156 | CG5171-RD | 173..962 | 9..798 | 3920 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 73..698 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404332 | 696..798 | 485 | 98.1 | Plus |
2L | 23513712 | 2L | 7403297..7403364 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:57 has no hits.
MXO02451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:17 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:50 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:04 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 143..938 | 3..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:17 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 167..962 | 3..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:17 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403291..7403361 | 3..73 | 95 | -> | Plus |
2L | 7403542..7404163 | 74..695 | 100 | -> | Plus |
2L | 7404230..7404332 | 696..798 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:04 Download gff for
MXO02451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403291..7403361 | 3..73 | 95 | -> | Plus |
arm_2L | 7403542..7404163 | 74..695 | 100 | -> | Plus |
arm_2L | 7404230..7404332 | 696..798 | 98 | | Plus |