Clone MXO02451 Report

Search the DGRC for MXO02451

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:51
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5171-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02451.3prime Sequence

843 bp (830 high quality bases) assembled on 2006-12-21

> MXO02451.3prime
ATGGTCTAGAAAGCTTGCAGAAACATACACATTGGCTATCCATTTGAGAA
GATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTGA
ATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCAC
TCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTCA
CTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGCA
GCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCATG
GGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAACT
GCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGTG
AGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCTC
CTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGTA
GCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATGA
TTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTTT
CAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCTA
TCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGGA
TTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAAC
TGGACTTTCAGAAATTAGATACCCAGGTAAATTATTCGCAAAATCCTCGA
GATTACTAATTACAGGTGCCACTTGTTTCTCAGGCATGTCGAC

MXO02451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 1..819 837..19 4095 100 Minus
CG5171-PA 822 CG5171-RA 1..819 837..19 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..1017 837..19 4095 100 Minus
CG5171-RE 1137 CG5171-RE 154..972 837..19 4095 100 Minus
CG5171-RD 1156 CG5171-RD 173..991 837..19 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 773..148 3130 100 Minus
2L 23513712 2L 7404230..7404361 150..19 660 100 Minus
2L 23513712 2L 7403297..7403364 837..770 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:19 has no hits.

MXO02451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:15 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 18..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:50 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 18..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:13 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 143..967 19..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:04 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 167..991 19..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:04 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7403291..7403361 773..843 95 -> Minus
2L 7403542..7404163 151..772 100 -> Minus
2L 7404230..7404366 14..150 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:13 Download gff for MXO02451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403291..7403361 773..843 95 -> Minus
arm_2L 7403542..7404163 151..772 100 -> Minus
arm_2L 7404230..7404366 14..150 97 -> Minus

MXO02451.5prime Sequence

798 bp (700 high quality bases) assembled on 2006-12-21

> MXO02451.5prime
CAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTAATCTCGAG
GATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGTCCAGTTGC
CGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGATAATCCAG
CGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACAAGATAGCC
AAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGACTGAAAGA
TGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGGTAATCATG
GACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACGAGCTACCC
ACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTCAAGGAGAA
GGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTCACTCACCT
ACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAAAGCAGTTG
GCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAGGCCCATGA
AGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGAGGCTGCCG
TGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGAAAGTGAGT
GTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATGAGAGTGCT
TCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCAGATTCAAA
CTTATGCGGATTTCCGGCTGCCCATGCAGGCTGTAATGACCGATCTTC

MXO02451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 1..790 9..798 3900 99.7 Plus
CG5171-PA 822 CG5171-RA 1..790 9..798 3900 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..988 9..798 3920 99.7 Plus
CG5171-RE 1137 CG5171-RE 154..943 9..798 3920 99.7 Plus
CG5171-RD 1156 CG5171-RD 173..962 9..798 3920 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 73..698 3130 100 Plus
2L 23513712 2L 7404230..7404332 696..798 485 98.1 Plus
2L 23513712 2L 7403297..7403364 9..76 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:03:57 has no hits.

MXO02451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:17 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..790 9..798 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:50 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..790 9..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:04 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 143..938 3..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:17 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 167..962 3..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:17 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7403291..7403361 3..73 95 -> Plus
2L 7403542..7404163 74..695 100 -> Plus
2L 7404230..7404332 696..798 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:04 Download gff for MXO02451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403291..7403361 3..73 95 -> Plus
arm_2L 7403542..7404163 74..695 100 -> Plus
arm_2L 7404230..7404332 696..798 98   Plus