MXO02452.3prime Sequence
905 bp (771 high quality bases) assembled on 2006-12-21
> MXO02452.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTCGTTATTCTCGTTTTGCCGCCTCA
GGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAGG
CGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAATG
AGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACGT
ACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCGT
AAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGAA
GTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGCA
GCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTTC
CGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGTC
CATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGCC
CACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTCA
ATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTGG
GTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGAA
TAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGCC
CCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTCC
TCGCTTCTCTAACGTGTCCACCAGAAAGAGACATAGGTCCGCGGCGCTGC
TTTCCTGTTCCTTGGCAATAAGCTGCTGTGCTCCATCAAAGAGCAGTTCC
AGGCAGTCCTGATAGCGTTTCTGCGCCGTATACCGAAAATACAGCGTCCT
ATACA
MXO02452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 131..1017 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 247..1133 | 905..19 | 4420 | 99.9 | Minus |
CG9853-RB | 1818 | CG9853-RB | 734..1620 | 905..19 | 4420 | 99.9 | Minus |
CG9853-RA | 1331 | CG9853-RA | 247..1133 | 905..19 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398756..4399385 | 19..648 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 4399446..4399681 | 649..884 | 1165 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:34 has no hits.
MXO02452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:19 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 132..1020 | 18..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:51 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 132..1020 | 18..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:40 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 248..1137 | 13..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:57 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 248..1137 | 13..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:57 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398752..4399385 | 13..648 | 99 | <- | Plus |
3R | 4399446..4399680 | 649..883 | 99 | <- | Plus |
3R | 4399742..4399762 | 884..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:40 Download gff for
MXO02452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224474..225107 | 13..648 | 99 | <- | Plus |
arm_3R | 225168..225402 | 649..883 | 99 | <- | Plus |
arm_3R | 225464..225484 | 884..904 | 100 | | Plus |
MXO02452.5prime Sequence
778 bp (620 high quality bases) assembled on 2006-12-21
> MXO02452.5prime
CAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCGGCAGTGCG
GTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAGTTGTCCCA
GTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTATAGGACGC
TGTATTTTCGGTATACGGCGCACAAACGCTATCAGGACTGCCTGGAACTG
CTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAAAGCAGCGC
CGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCGAGGACCAC
AGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAGGGGCTTTG
ATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTTATTCAACG
GACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCACCCAGTGC
TCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACATTGAGTCG
GCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGTGGGCGAGT
GCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGATGGACTTGT
TTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATCGGAAAACT
GCAGAGGACACGTTCACTGAGTACACACGCTACCACGCTCAGCTGCTTAA
GCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTACTTCCTAT
TCCGTCTTATTGACGCGAAGCGTGTGGC
MXO02452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 1..770 | 9..778 | 3775 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 117..886 | 9..778 | 3805 | 99.6 | Plus |
CG9853-RB | 1818 | CG9853-RB | 604..1373 | 9..778 | 3805 | 99.6 | Plus |
CG9853-RA | 1331 | CG9853-RA | 117..886 | 9..778 | 3805 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4399003..4399385 | 778..396 | 1885 | 99.5 | Minus |
3R | 32079331 | 3R | 4399446..4399681 | 395..160 | 1165 | 99.6 | Minus |
3R | 32079331 | 3R | 4399739..4399893 | 163..9 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:04 has no hits.
MXO02452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:20 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..770 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:51 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..770 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:53 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..886 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:18 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..886 | 9..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:18 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4399003..4399385 | 396..778 | 99 | <- | Minus |
3R | 4399446..4399680 | 161..395 | 99 | <- | Minus |
3R | 4399742..4399893 | 9..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:53 Download gff for
MXO02452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224725..225107 | 396..778 | 99 | <- | Minus |
arm_3R | 225168..225402 | 161..395 | 99 | <- | Minus |
arm_3R | 225464..225615 | 9..160 | 100 | | Minus |