Clone MXO02452 Report

Search the DGRC for MXO02452

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:52
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9853-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02452.3prime Sequence

905 bp (771 high quality bases) assembled on 2006-12-21

> MXO02452.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTCGTTATTCTCGTTTTGCCGCCTCA
GGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAGG
CGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAATG
AGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACGT
ACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCGT
AAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGAA
GTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGCA
GCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTTC
CGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGTC
CATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGCC
CACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTCA
ATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTGG
GTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGAA
TAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGCC
CCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTCC
TCGCTTCTCTAACGTGTCCACCAGAAAGAGACATAGGTCCGCGGCGCTGC
TTTCCTGTTCCTTGGCAATAAGCTGCTGTGCTCCATCAAAGAGCAGTTCC
AGGCAGTCCTGATAGCGTTTCTGCGCCGTATACCGAAAATACAGCGTCCT
ATACA

MXO02452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 131..1017 905..19 4410 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 247..1133 905..19 4420 99.9 Minus
CG9853-RB 1818 CG9853-RB 734..1620 905..19 4420 99.9 Minus
CG9853-RA 1331 CG9853-RA 247..1133 905..19 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398756..4399385 19..648 3150 100 Plus
3R 32079331 3R 4399446..4399681 649..884 1165 99.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:39:34 has no hits.

MXO02452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:19 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 132..1020 18..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:51 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 132..1020 18..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:40 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 248..1137 13..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:57 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 248..1137 13..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:57 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4398752..4399385 13..648 99 <- Plus
3R 4399446..4399680 649..883 99 <- Plus
3R 4399742..4399762 884..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:40 Download gff for MXO02452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224474..225107 13..648 99 <- Plus
arm_3R 225168..225402 649..883 99 <- Plus
arm_3R 225464..225484 884..904 100   Plus

MXO02452.5prime Sequence

778 bp (620 high quality bases) assembled on 2006-12-21

> MXO02452.5prime
CAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCGGCAGTGCG
GTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAGTTGTCCCA
GTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTATAGGACGC
TGTATTTTCGGTATACGGCGCACAAACGCTATCAGGACTGCCTGGAACTG
CTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAAAGCAGCGC
CGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCGAGGACCAC
AGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAGGGGCTTTG
ATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTTATTCAACG
GACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCACCCAGTGC
TCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACATTGAGTCG
GCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGTGGGCGAGT
GCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGATGGACTTGT
TTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATCGGAAAACT
GCAGAGGACACGTTCACTGAGTACACACGCTACCACGCTCAGCTGCTTAA
GCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTACTTCCTAT
TCCGTCTTATTGACGCGAAGCGTGTGGC

MXO02452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 1..770 9..778 3775 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 117..886 9..778 3805 99.6 Plus
CG9853-RB 1818 CG9853-RB 604..1373 9..778 3805 99.6 Plus
CG9853-RA 1331 CG9853-RA 117..886 9..778 3805 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4399003..4399385 778..396 1885 99.5 Minus
3R 32079331 3R 4399446..4399681 395..160 1165 99.6 Minus
3R 32079331 3R 4399739..4399893 163..9 775 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:04 has no hits.

MXO02452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:20 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..770 9..778 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:51 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..770 9..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:53 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..886 9..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:18 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..886 9..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:18 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4399003..4399385 396..778 99 <- Minus
3R 4399446..4399680 161..395 99 <- Minus
3R 4399742..4399893 9..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:53 Download gff for MXO02452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224725..225107 396..778 99 <- Minus
arm_3R 225168..225402 161..395 99 <- Minus
arm_3R 225464..225615 9..160 100   Minus