MXO02453.3prime Sequence
849 bp (787 high quality bases) assembled on 2006-12-21
> MXO02453.3prime
ATGGTCTAGAAAGCTTGCGACTTTGCGCTTGCGCTTCGCCTTGGTAGCTC
CTTGAGGAGTCGACGTGGCCTGGGCCTCCATTATGGAAAGATCCGGTGTG
GAGGCTCCCTTTCCAGCCACCAGTTTCTTGACCGCCTTGACTTTCGGCCT
GGCTGCCTTGGGCTGAGCCAGAGTTCCAATGGACTTTCGCGACTTTTTAG
TCTTTCCCGCCTCGGATGAATCCGCTTGTAGCTTGACTTTGGTTTTGGCC
GGCTTCTTTCCCGCTTCAGGAATCGCTGTCTGGGATGTTTCCAGCATGGC
CTGCGCGGCAGCGGATGAAGCTGCTTTAGATGCTGGCGGATTATCCTTGG
TTCCATCCTCGGGCTTCTTCTTTTTTACAGCTTGTTTTGTTTTCCGCTCG
GTTGGTTTACTGGATTTTTCCTTGGAGGCCTTCTTTTCCTTCATCTTCGC
CTTGGCCTCTTTCTTTTGAATCTTCTCCTTTAAAACTTTCTCAACTTTGG
CTTTCTTTTCCTTCTCCTTCTGTTTCTTTGCCTTCATTTTCTCCACAGCC
TTTGAGGAGTTCTTCTGCTTATCGGTGAGTTTAAAGGATCGCTTAACCAT
CACCACTTCGCCGTTGGCTTCGGCCAATTTTAAAGCTCGATGGAGGAGGC
GGGCGGTTTTCTTCGGATCCTTCCACTCCTGACCATTGTCCTTTAGGTAT
GTCATTATGGCCTGAACCGATGAGCCCGATCGGCTCGCCAACTTCCCGAT
GGCCATAAGAGCTAGGGATATGAGCGTACCCTTTGGTTTTGGACCATCGA
CTTGGGGTGTCAGAATCGGGGGGCACAGTTTCGACCATCATCAGGCGGC
MXO02453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3509-PA | 1062 | CG3509-RA | 286..1059 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BigH1-RA | 1279 | CG3509-RA | 366..1200 | 849..19 | 4075 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14663815..14664287 | 849..381 | 2165 | 99.2 | Minus |
| 3R | 32079331 | 3R | 14664381..14664743 | 381..19 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:43 has no hits.
MXO02453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:22 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-PA | 225..1062 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:51 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-PA | 225..1062 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:43 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 373..1212 | 11..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:38 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BigH1-RA | 366..1205 | 11..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:38 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14663815..14664286 | 382..849 | 99 | -> | Minus |
| 3R | 14664381..14664748 | 11..381 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:43 Download gff for
MXO02453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10489537..10490008 | 382..849 | 99 | -> | Minus |
| arm_3R | 10490103..10490470 | 11..381 | 98 | | Minus |
MXO02453.5prime Sequence
793 bp (781 high quality bases) assembled on 2006-12-21
> MXO02453.5prime
CAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCTCGGATGAT
GAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAAGACTCCAA
TATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGAGATGGAGG
AGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGACAGATAAT
CTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGATGATGGGTC
GAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGTCCCAAAAC
CAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGAAGTTGGCG
AGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTAAAGGACAA
TGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCTCCATCGAG
CTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTAAGCGATCC
TTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTGGAGAAAAT
GAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGTTGAGAAAG
TTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGATGAAGGAA
AAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGGAAAACAAA
ACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGATAATCCGC
CAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGCT
MXO02453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3509-PA | 1062 | CG3509-RA | 1..785 | 9..793 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BigH1-RA | 1279 | CG3509-RA | 140..926 | 7..793 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14663589..14664287 | 7..705 | 3495 | 100 | Plus |
| 3R | 32079331 | 3R | 14664381..14664469 | 705..793 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:02 has no hits.
MXO02453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:24 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-PA | 1..785 | 9..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:52 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-PA | 1..785 | 9..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:05 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3509-RA | 141..933 | 1..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:06 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BigH1-RA | 134..926 | 1..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:06 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14663583..14664286 | 1..704 | 99 | -> | Plus |
| 3R | 14664381..14664469 | 705..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:05 Download gff for
MXO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10489305..10490008 | 1..704 | 99 | -> | Plus |
| arm_3R | 10490103..10490191 | 705..793 | 100 | | Plus |
