MXO02454.3prime Sequence
929 bp (796 high quality bases) assembled on 2006-12-21
> MXO02454.3prime
ATGGTCTAGAAAGCTTGCGATAATATGGCGTTGTTCATCATAGACTTGCT
TTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGCA
TCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCTT
GCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAAG
GAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCGT
ATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAAG
GCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAAC
TCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGAG
CTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTCC
GCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAACT
GGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGCT
CCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGAT
GATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGTA
TTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAACA
GCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGAG
CACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCTGAA
CACCATTTAGAATTCCGTANGCTTCGTCCACGTGGAGCAACTTGAAGGCA
CTCCTGGCCCTCCAGCCTTCGTCTTTGGCTTGTCGGTAATAGATATCTCG
TTTGTCCTTTGATGTTTTCCCATGTCGAC
MXO02454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 909 | CG5220-RA | 4..906 | 921..19 | 4496 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 169..1071 | 921..19 | 4504 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041705 | 804..121 | 3420 | 100 | Minus |
3R | 32079331 | 3R | 17040850..17040969 | 921..802 | 589 | 99.2 | Minus |
3R | 32079331 | 3R | 17041763..17041864 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:45 has no hits.
MXO02454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:25 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:52 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:21 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 169..1080 | 10..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:42 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 169..1080 | 10..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:42 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040850..17040967 | 804..921 | 99 | -> | Minus |
3R | 17041023..17041705 | 121..803 | 100 | -> | Minus |
3R | 17041763..17041873 | 10..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:21 Download gff for
MXO02454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866572..12866689 | 804..921 | 99 | -> | Minus |
arm_3R | 12866745..12867427 | 121..803 | 100 | -> | Minus |
arm_3R | 12867485..12867595 | 10..120 | 96 | | Minus |