Clone MXO02454 Report

Search the DGRC for MXO02454

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5220-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02454.3prime Sequence

929 bp (796 high quality bases) assembled on 2006-12-21

> MXO02454.3prime
ATGGTCTAGAAAGCTTGCGATAATATGGCGTTGTTCATCATAGACTTGCT
TTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGCA
TCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCTT
GCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAAG
GAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCGT
ATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAAG
GCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAAC
TCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGAG
CTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTCC
GCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAACT
GGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGCT
CCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGAT
GATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGTA
TTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAACA
GCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGAG
CACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCTGAA
CACCATTTAGAATTCCGTANGCTTCGTCCACGTGGAGCAACTTGAAGGCA
CTCCTGGCCCTCCAGCCTTCGTCTTTGGCTTGTCGGTAATAGATATCTCG
TTTGTCCTTTGATGTTTTCCCATGTCGAC

MXO02454.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 909 CG5220-RA 4..906 921..19 4496 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 169..1071 921..19 4504 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041705 804..121 3420 100 Minus
3R 32079331 3R 17040850..17040969 921..802 589 99.2 Minus
3R 32079331 3R 17041763..17041864 120..19 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:45 has no hits.

MXO02454.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:25 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..909 15..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:52 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..909 15..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:21 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 169..1080 10..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:42 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 169..1080 10..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:42 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17040850..17040967 804..921 99 -> Minus
3R 17041023..17041705 121..803 100 -> Minus
3R 17041763..17041873 10..120 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:21 Download gff for MXO02454.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866572..12866689 804..921 99 -> Minus
arm_3R 12866745..12867427 121..803 100 -> Minus
arm_3R 12867485..12867595 10..120 96   Minus