Clone MXO02455 Report

Search the DGRC for MXO02455

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:55
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11583-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02455.5prime Sequence

668 bp (490 high quality bases) assembled on 2006-12-21

> MXO02455.5prime
CAGTCGACTTGGGTCGCAAATTCCAGAATAAGAAAAAGAAGGCCGCGCCG
CAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCGCCACAGAG
ATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAACAAACAGC
GCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACCGGCTCTTA
ATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAATCCAAAAT
GGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGAAATGAAGC
ACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGGATCTGTAC
ATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCTAAATTCCT
CATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGGAAACTGCT
TGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCGACGAGCTG
CCGCACCTTACGCTGCTCAAGGAGCTGTTCGTGCACACCTACTCCGTGCC
CAGCCATCGTCCCAAGAGCCAGCCCTTCGTCGATCACGTTTTCACCTTCA
CCTACCTGGACAAACGCATCTGGTTCAGATATTTCCAGATTCTATCCGAA
GATGGCGGCTTGTCCGAA

MXO02455.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-PA 1071 CG11583-RA 2..660 10..668 3120 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-RA 1253 CG11583-RA 90..748 10..668 3190 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4282009..4282550 668..127 2605 98.7 Minus
3L 28110227 3L 4282609..4282728 129..10 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:12:23 has no hits.

MXO02455.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:29 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32253-PA 2..658 10..666 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:53 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-PA 2..658 10..666 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:37 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 90..748 10..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:09 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 90..748 10..668 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:09 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4282009..4282548 129..668 98 <- Minus
3L 4282610..4282728 10..128 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:37 Download gff for MXO02455.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4282009..4282548 129..668 98 <- Minus
arm_3L 4282610..4282728 10..128 100   Minus

MXO02455.3prime Sequence

849 bp (810 high quality bases) assembled on 2006-12-21

> MXO02455.3prime
ATGGTCTAGAAAGCTTGCAACCTTTTTCACGCGTTTAATGGTTCTTGCCT
TCTTTCTTTCAATCACATCTTTCACGGCCTGCAGTTGTTTCTCCTTGATC
TTCTTGGTCAGCGCCGATTTGGGTGTCTGTTTGGCGGCTTCCTCCTTCTT
CTTTTTGGCTATCGCAGCCAGTATCTTGGCCGTCTCCACGGGATCATCGT
CCTCGAATAGCTCATCGTTATCCATGCCATCGTAGGCTCTAATAGGTCGC
GTGGCCTCGTGCTTGACCTTTTGCTCCACTCGGTTCACGTACTTATCCTT
GGCAGCCTTCTTAAGTACCTGCCGCTGTTTGGATGGACTCACGTAGTCCG
GATTCTCCCAAATGGTTTTGCCAGTGAAGGAACCATCGAATATTTTTACA
GGATTCATCACGTAACGCGGCCCGACTTCGGACAAACCGCCATCTTCGGA
TAGAATCTGGAAATTTCTGAACCAGATGCGTTTGTCCAGGTAGGTGAAGG
TGAAAACGTGATCGACGAAGGGCTGGCTCTTGGGATGATGGTTGGGCACG
GAGTAGGTCTGCACGAACAGCTCCTTGAGCAGCTTAAGGTGCGGCAGCTC
GTCGAATTTGGAGTCAAACGAGAGCAGCGGACGTGATCCCCGCAAGCAGT
TTCCCGTCATCTTCAGTTCGGCCATTGTATGAATGTTTTCGATGAGGAAT
TTAGCGGATGGACCAGTCGATCCCGAGGTGTTGGATATCCACATGTACAG
ATCCCTTTTCCGGCGTCCCTCGAACAGCATCGCCTTGTTGCAGTGCTTCA
TTTCGCACATTTCGTTGACCACCGACAAGGTTTTGGAGCGCTCCATTTT

MXO02455.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-PA 1071 CG11583-RA 238..1068 849..19 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11583-RA 1253 CG11583-RA 326..1156 849..19 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4281601..4282431 19..849 4155 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:11:24 has no hits.

MXO02455.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:27 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32253-PA 238..1071 15..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:52 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-PA 238..1071 15..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:26 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 326..1159 15..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:39 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11583-RA 326..1159 15..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:39 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4281597..4282431 15..849 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:26 Download gff for MXO02455.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4281597..4282431 15..849 99   Plus