Clone MXO02456 Report

Search the DGRC for MXO02456

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:56
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11784-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02456.3prime Sequence

702 bp (702 high quality bases) assembled on 2006-12-21

> MXO02456.3prime
ATGGTCTAGAAAGCTTGCCTGGCTCTTCGCTTTGTTCTCGGCCATGCAGC
TCAGGATGCGGGTCTGCAGAGCCCGTGCACCCTTGAGGTTGATCTCCTCG
TTGTCGGGCAACAACTTATCCATGCGTTCCATCCATTGCTTAGTCTGCGG
GTACTTTTCCCGTTCCACTGGTATGAGCAGATCCAAGGTCACCAGAGTGG
TGTGGATGGACACGTCGGCAACGCTCAGTTCGTTGCCCACCACGAAACTT
CCTTGCTGCAGAAAGTGTTCCAAGTCGGAGTACGCATTGTGGCAGAGGGT
CAGCGATCGGGGGTTGTATTCTCCCTCGCCACCGTAAATGTTCCGAGCCA
CAATGTCCTTTACCACCTGAAATAGCACTCCGTTCTCGTAGTGCATGCGA
TGGTCGATGTGGGCTCTCCTTTTCAAATCCCGCGGATAGAGTTGGTCATT
CCCGGCGTACTTGGCTACCAGGAAGCACACGATGGCGTGACTGTCCACGT
AGACCTCGCCATCGCTGTCCACAAACACCGGGATCTGGTGCTGGGGGTTT
AGCTTGACAAATTCCTCGCTCAGGTGTTCCTTCTTGGCGAAGTCAACGGG
TTTGAGCTCCAGGTCCAGTCCAATAAGTTTGGCCACCAGGATGCATGCCC
TGGCAGGAGGACTAAAAAGGGCGTAGTACAGCGTTGGCTTCGACATGTCG
AC

MXO02456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..907 696..19 3390 100 Minus
GstE13-RA 862 CG11784-RA 31..708 696..19 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123155 554..19 2680 100 Minus
2R 25286936 2R 9122354..9122448 696..602 475 100 Minus
2R 25286936 2R 9122519..9122567 601..553 245 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:25:04 has no hits.

MXO02456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:30 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:53 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:34 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 26..714 11..702 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:15 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 26..714 11..702 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:15 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122349..9122448 602..702 97 -> Minus
2R 9122519..9122567 553..601 100 -> Minus
2R 9122622..9123161 11..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:34 Download gff for MXO02456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009854..5009953 602..702 97 -> Minus
arm_2R 5010024..5010072 553..601 100 -> Minus
arm_2R 5010127..5010666 11..552 99   Minus

MXO02456.5prime Sequence

702 bp (702 high quality bases) assembled on 2006-12-21

> MXO02456.5prime
CAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTAGTCCTCCT
GCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGACCTGGAGCT
CAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGAATTTGTCA
AGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCGATGGCGAG
GTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCCAAGTACGC
CGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGCCCACATCG
ACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGGTAAAGGAC
ATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAACCCCCGATC
GCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTTTCTGCAGC
AAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACGTGTCCATC
CACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAACGGGAAAA
GTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTTGTTGCCCG
ACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGACCCGCATC
CTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGCTTTCTAGA
CC

MXO02456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..678 9..686 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..907 9..686 3390 100 Plus
GstE13-RA 862 CG11784-RA 31..708 9..686 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123155 151..686 2680 100 Plus
2R 25286936 2R 9122354..9122448 9..103 475 100 Plus
2R 25286936 2R 9122519..9122567 104..152 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:10:06 has no hits.

MXO02456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:32 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 9..687 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:54 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 9..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:28 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 24..714 1..694 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:56 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 24..714 1..694 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:56 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122347..9122448 1..103 96 -> Plus
2R 9122519..9122567 104..152 100 -> Plus
2R 9122622..9123161 153..694 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:28 Download gff for MXO02456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009852..5009953 1..103 96 -> Plus
arm_2R 5010024..5010072 104..152 100 -> Plus
arm_2R 5010127..5010666 153..694 99   Plus