MXO02457.5prime Sequence
910 bp (811 high quality bases) assembled on 2006-12-21
> MXO02457.5prime
CAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCTGCGTCATC
GTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCATGCCCAGAG
TCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCTGGAGACGA
GGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCCACGAGCTA
ACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTGCTCTTCAA
GGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTCCATTGGCC
GTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCACGCTGATT
GTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCCATCGATTG
GCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAAGGGAGAGC
AGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACTTCGGCTCC
AAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAGGATCTGCA
GCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCGTGCGCCCG
CGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGTACCTGAAG
CTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAACAATCCGA
TGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGGTGTTGTGC
AGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCAGTTGGACG
CCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCTTACGAGGA
GACTGCGCAAGCAGAGCCGTTNGTTTATCCTTTCCTGCTGTGTATCATCA
CCGGAAAGGG
MXO02457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-PA | 1341 | CG18012-RA | 1..902 | 9..910 | 4466 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-RA | 1607 | CG18012-RA | 88..989 | 9..910 | 4484 | 99.8 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 198..898 | 210..910 | 3464 | 99.6 | Plus |
| CG18012-RC | 1516 | CG18012-RC | 88..201 | 9..122 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17810479..17811039 | 569..9 | 2805 | 100 | Minus |
| 3R | 32079331 | 3R | 17810077..17810419 | 910..568 | 1689 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4593..4630 | 298..261 | 109 | 76.3 | Minus |
MXO02457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:35 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-PA | 1..902 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:55 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-PA | 1..902 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:30 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..989 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:27 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 83..989 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:27 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17810077..17810418 | 569..910 | 99 | <- | Minus |
| 3R | 17810480..17811044 | 1..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:30 Download gff for
MXO02457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13635799..13636140 | 569..910 | 99 | <- | Minus |
| arm_3R | 13636202..13636766 | 1..568 | 99 | | Minus |
MXO02457.3prime Sequence
832 bp (717 high quality bases) assembled on 2006-12-21
> MXO02457.3prime
ATGGTCTAGAAAGCTTGCTAGAAATGCCTCCAGTACGGGGGCCGCGATCA
GGCGCCAACTCTCCCGCCATCGCAGCTCCTGGAACTCCTGGATTTTGCGC
TGAAAACCAGCTCTTGTCTCCAGGATGCTGGGATTCTTTGGAAAATTTTC
GAACCAAATCCTCAGCTGCTCGGCCAGCTGAACATGGTCGCCAAACACGA
AGCCATTCTCGCCGTGCTTCACCAGCTCATCCAGGCACTTGAAATCGTAG
GCGCAGACAGGCAGCCCGCTGCCGAACATGTCGACCACCTTCATGGGCAG
GTCGAGCCCACTGGTGCTCCAGTGCAGACACACGCCCAGGTCGGCGCTGG
CCAGAACAGTGGGGTAGTCCTCGATCTCTAGCCAGGGCGTGATCACCGAC
ACCTTCTGCCATTGCAGCTTCTCGATCTCCGCCACATAGTGCTCCTTTTG
TGGCCCCTTTCCGGTGATGATACACAGCAGGGAAGGATAAACCAACGGCT
CTGCTTGCGCAGTCTCCTCGTAAGCTTGCAAAGCCTTAAGCAGTATACCG
AAGTCCTCGTCCGGCGTCCAACTGGTGCTGGAAACCAGCACGGCTTGTCG
CTGTGGTCTGTACTGCACAACACCGCTGGCCAGCTTTTGGGTAAGAGCGG
TGGCCTCCAGAACATCGGATTGTTCGGCGTCCTTGGCCTGGAACTGTGGG
TAGTCTTTGGCCAGCTTCAGGTACAGCTCGTGCTTGTGAGTCAAGTCGAT
GGGATGGAATTGCGCGGGCGCACGATCATACAGAACTTTGACAGGCCCAA
TGCCCCAGTTTTGCTGCAGATCCTCTTGCATG
MXO02457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-PA | 1341 | CG18012-RA | 525..1338 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18012-RC | 1516 | CG18012-RC | 521..1334 | 832..19 | 4070 | 100 | Minus |
| CG18012-RA | 1607 | CG18012-RA | 612..1425 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17809858..17810419 | 236..797 | 2810 | 100 | Plus |
| 3R | 32079331 | 3R | 17809583..17809800 | 19..236 | 1090 | 100 | Plus |
| 3R | 32079331 | 3R | 17810479..17810515 | 796..832 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:24 has no hits.
MXO02457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:33 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-PA | 525..1341 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:54 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-PA | 525..1341 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:33 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 612..1434 | 10..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:51 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18012-RA | 612..1434 | 10..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:51 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17809573..17809799 | 10..235 | 98 | <- | Plus |
| 3R | 17809858..17810418 | 236..796 | 100 | <- | Plus |
| 3R | 17810480..17810515 | 797..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:33 Download gff for
MXO02457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13635295..13635521 | 10..235 | 98 | <- | Plus |
| arm_3R | 13635580..13636140 | 236..796 | 100 | <- | Plus |
| arm_3R | 13636202..13636237 | 797..832 | 100 | | Plus |
