MXO02458.3prime Sequence
770 bp (741 high quality bases) assembled on 2006-12-21
> MXO02458.3prime
ATGGTCTAGAAAGCTTGCGACCTTCATCACATCCCAAGGATCGTCCATAT
AGTGCAGGATGGCTTTGTCGTGCAGTCTTTCGCCAAAAACCTCCTTAAGC
AGGCGTAGAACGCATTCCTCAATGAATGCCACCTGATCCTGGGGGCAGTA
GTCATCTTGAGCGGAATGGGCCATTGTAATGGCCACTGGAGGAACTGGCA
GGCGCTGTAAGAAACGCTTGAAGTTTGCAAAGTACGTTTCCAACTCTTCG
GCGATGCTGATGTGGTGGGGCAAGCCATTATTATCGGTGGTGCTGCCCGA
ATCGAAGATCAAATGCCAGTCGATTTCATCGTCTGGATATTTCTCCTGCA
GCTGATCGGCCAGTTTCACAATCTTGGCGTACACTTCGGGCGTGACCACG
GTCTCGTCCGGCTTTTCCAGTCCCTCGAAATTGCGCTCCTCCTCCAGATG
CCAGAAAATCGTCTTCAGTGCATCCAACTGAGTCTGTCGCCTCTCTGCCG
TGGCCAAATAATCTGCTATAGTAGCCGTGCCCGACTTCTTCACCTTCTCC
ACGCTTTCGAAGTGGAAGATCTCCTTTAGCTGATTGTAGCAATCGGCATC
CTTGTATATTTCCAAGAAGGGGTTGGAGGTGCTGAAAAAGTCGAGGTCTA
TGTCCAGCACGAATCCCTTGGCGTCCTTCTCCGTTAGGAATTCGTTCGGA
TTGAGGCTTTCGTTGTCTGCATCGTGAACCTGCAGCTCCACGCTCTTGGC
ATCCTGCAGATCCTCCGTAG
MXO02458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6818-PA | 1413 | MESR6-RA | 659..1407 | 770..22 | 3745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESR6-RB | 1791 | CG6818-RB | 841..1589 | 770..22 | 3745 | 100 | Minus |
| MESR6-RA | 1749 | CG6818-RA | 799..1547 | 770..22 | 3745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19093810..19094558 | 770..22 | 3745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:22 has no hits.
MXO02458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:37 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-PA | 659..1413 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:55 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6818-PA | 659..1413 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:47 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 799..1557 | 11..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:26 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 799..1557 | 11..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:26 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19093810..19094568 | 11..770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:47 Download gff for
MXO02458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19086910..19087668 | 11..770 | 99 | | Minus |
MXO02458.5prime Sequence
885 bp (756 high quality bases) assembled on 2006-12-21
> MXO02458.5prime
CAGTCGACATGGAATCGGATACGCTGGACCAGGAGAGTGCCGCGGCTGCT
CTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAGAAATGGGA
GCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGAGGCGCCGC
CAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATCGGGAGGAA
GACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGATGGCGAGGG
CATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCAGCGCATCC
CCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCATCTACCGC
TGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTTGTCCACTT
CGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGCCAGTTCCA
CCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGAACTGGATC
ATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGGCTGAAGAA
CTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAAGGTTGGAC
AAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACTTTATTGCC
GACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAGAGCGTGGA
GCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAACGAATTCC
TAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACCTCGACTTT
TTCAGCACCTCCNACCCCTTCTTGGAAATATACAAGGATGCCGATTGCTA
CAATCAGCTAAAGGAGATCTTCCACTTCGAAAGCG
MXO02458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6818-PA | 1413 | MESR6-RA | 1..877 | 9..885 | 4366 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESR6-RA | 1749 | CG6818-RA | 141..1017 | 9..885 | 4374 | 99.9 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 141..651 | 9..519 | 2555 | 100 | Plus |
| MESR6-RB | 1791 | CG6818-RB | 693..1059 | 519..885 | 1824 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19092810..19093321 | 9..520 | 2560 | 100 | Plus |
| 3L | 28110227 | 3L | 19093661..19094028 | 518..885 | 1829 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:23 has no hits.
MXO02458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:38 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:55 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6818-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:31 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1017 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:29 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESR6-RA | 133..1017 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:29 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19092802..19093320 | 1..519 | 99 | -> | Plus |
| 3L | 19093663..19094028 | 520..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:31 Download gff for
MXO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19085902..19086420 | 1..519 | 99 | -> | Plus |
| arm_3L | 19086763..19087128 | 520..885 | 99 | | Plus |
