Clone MXO02459 Report

Search the DGRC for MXO02459

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:59
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9393-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02459.3prime Sequence

866 bp (784 high quality bases) assembled on 2006-12-21

> MXO02459.3prime
ATGGTCTAGAAAGCTTGCGTCTAGGCCCTCCTCCATCTCGTCATCCTCGT
AATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTAA
ATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGCC
GGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAGG
CCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGAA
CTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGTT
CACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGCA
GTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAAC
TCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGGA
GAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCGT
GCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCACG
TCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGAA
TGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGAG
GCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACACC
CAGTTGGCGTANGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCGC
ATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAGC
CCGCGAACTTCTGGTTGCCGATCTGCAAATACGGCAGCTTCCCGGCTCCC
GAAACGCACGGATTGG

MXO02459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 147..981 853..19 4131 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1479 CG9393-RA 285..1132 866..19 4169 99.5 Minus
CG9393-RB 1589 CG9393-RB 285..1060 866..91 3809 99.5 Minus
CG9393-RB 1589 CG9393-RB 1168..1242 93..19 375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562175..9562570 91..486 1980 100 Plus
3R 32079331 3R 9562817..9563097 487..767 1394 99.6 Plus
3R 32079331 3R 9563189..9563277 765..853 430 98.9 Plus
3R 32079331 3R 9561930..9562004 19..93 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:49 has no hits.

MXO02459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:40 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 134..984 15..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:56 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 134..984 15..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:49 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 285..1135 15..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:41 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 285..1135 15..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:41 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9562817..9563095 487..765 99 <- Plus
3R 9563190..9563290 766..866 97   Plus
3R 9561927..9562001 15..90 97 <- Plus
3R 9562175..9562570 91..486 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:49 Download gff for MXO02459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387649..5387723 15..90 97 <- Plus
arm_3R 5387897..5388292 91..486 100 <- Plus
arm_3R 5388539..5388817 487..765 99 <- Plus
arm_3R 5388912..5389012 766..866 97   Plus

MXO02459.5prime Sequence

860 bp (836 high quality bases) assembled on 2006-12-21

> MXO02459.5prime
CAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGTACAAGGGG
GAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCTCTGTGCCT
CCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTCCAATCCGC
TGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCAACCAGAAG
TTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAGGGTTACCC
GATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCACCGCCTACG
CCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACTTCCTGTTT
GGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTACGCCAAGCG
CACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCAAAGGGAAG
CCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACGACAAGTTG
GACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAAGTGGTGAA
CCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGGCGACACCT
ACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCATCTTTAAG
ATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGCTGCCAAAA
CCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCGCATCGAGG
GATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGGAGGCCAGT
CTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAACACCAAAAT
AGTAGCCGGC

MXO02459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 1..852 9..860 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RB 1589 CG9393-RB 152..1003 9..860 4260 100 Plus
CG9393-RA 1479 CG9393-RA 152..1003 9..860 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562232..9562570 860..522 1695 100 Minus
3R 32079331 3R 9562817..9563097 521..241 1405 100 Minus
3R 32079331 3R 9563189..9563337 243..95 745 100 Minus
3R 32079331 3R 9563436..9563522 95..9 435 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:37:25 has no hits.

MXO02459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:41 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..852 9..860 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:56 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..852 9..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:38 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 148..1003 1..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:50 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 148..1003 1..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:50 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9562232..9562570 522..860 100 <- Minus
3R 9562817..9563095 243..521 100 <- Minus
3R 9563190..9563336 96..242 100 <- Minus
3R 9563436..9563526 1..95 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:38 Download gff for MXO02459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387954..5388292 522..860 100 <- Minus
arm_3R 5388539..5388817 243..521 100 <- Minus
arm_3R 5388912..5389058 96..242 100 <- Minus
arm_3R 5389158..5389248 1..95 95   Minus