Clone Sequence Records
MXO02459.3prime Sequence
866 bp (784 high quality bases) assembled on 2006-12-21
> MXO02459.3prime
ATGGTCTAGAAAGCTTGCGTCTAGGCCCTCCTCCATCTCGTCATCCTCGT
AATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTAA
ATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGCC
GGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAGG
CCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGAA
CTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGTT
CACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGCA
GTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAAC
TCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGGA
GAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCGT
GCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCACG
TCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGAA
TGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGAG
GCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACACC
CAGTTGGCGTANGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCGC
ATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAGC
CCGCGAACTTCTGGTTGCCGATCTGCAAATACGGCAGCTTCCCGGCTCCC
GAAACGCACGGATTGG
MXO02459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 147..981 | 853..19 | 4131 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 1479 | CG9393-RA | 285..1132 | 866..19 | 4169 | 99.5 | Minus |
CG9393-RB | 1589 | CG9393-RB | 285..1060 | 866..91 | 3809 | 99.5 | Minus |
CG9393-RB | 1589 | CG9393-RB | 1168..1242 | 93..19 | 375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562175..9562570 | 91..486 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 9562817..9563097 | 487..767 | 1394 | 99.6 | Plus |
3R | 32079331 | 3R | 9563189..9563277 | 765..853 | 430 | 98.9 | Plus |
3R | 32079331 | 3R | 9561930..9562004 | 19..93 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:49 has no hits.
MXO02459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:40 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 134..984 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:56 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 134..984 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:49 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 285..1135 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:41 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 285..1135 | 15..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:41 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562817..9563095 | 487..765 | 99 | <- | Plus |
3R | 9563190..9563290 | 766..866 | 97 | | Plus |
3R | 9561927..9562001 | 15..90 | 97 | <- | Plus |
3R | 9562175..9562570 | 91..486 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:49 Download gff for
MXO02459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387649..5387723 | 15..90 | 97 | <- | Plus |
arm_3R | 5387897..5388292 | 91..486 | 100 | <- | Plus |
arm_3R | 5388539..5388817 | 487..765 | 99 | <- | Plus |
arm_3R | 5388912..5389012 | 766..866 | 97 | | Plus |
MXO02459.5prime Sequence
860 bp (836 high quality bases) assembled on 2006-12-21
> MXO02459.5prime
CAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGTACAAGGGG
GAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCTCTGTGCCT
CCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTCCAATCCGC
TGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCAACCAGAAG
TTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAGGGTTACCC
GATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCACCGCCTACG
CCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACTTCCTGTTT
GGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTACGCCAAGCG
CACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCAAAGGGAAG
CCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACGACAAGTTG
GACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAAGTGGTGAA
CCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGGCGACACCT
ACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCATCTTTAAG
ATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGCTGCCAAAA
CCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCGCATCGAGG
GATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGGAGGCCAGT
CTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAACACCAAAAT
AGTAGCCGGC
MXO02459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 1..852 | 9..860 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RB | 1589 | CG9393-RB | 152..1003 | 9..860 | 4260 | 100 | Plus |
CG9393-RA | 1479 | CG9393-RA | 152..1003 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562232..9562570 | 860..522 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 521..241 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 243..95 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563522 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:25 has no hits.
MXO02459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:41 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..852 | 9..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:56 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..852 | 9..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:38 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 148..1003 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:50 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 148..1003 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:50 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562232..9562570 | 522..860 | 100 | <- | Minus |
3R | 9562817..9563095 | 243..521 | 100 | <- | Minus |
3R | 9563190..9563336 | 96..242 | 100 | <- | Minus |
3R | 9563436..9563526 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:38 Download gff for
MXO02459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387954..5388292 | 522..860 | 100 | <- | Minus |
arm_3R | 5388539..5388817 | 243..521 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 96..242 | 100 | <- | Minus |
arm_3R | 5389158..5389248 | 1..95 | 95 | | Minus |