Clone MXO02461 Report

Search the DGRC for MXO02461

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:61
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5854-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02461.3prime Sequence

469 bp (414 high quality bases) assembled on 2006-12-21

> MXO02461.3prime
ATGGTCTAGAAAGCTTGCAAGAACCAACGATTTCGGAAACAATTGCTGCT
TCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGGA
TGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGAG
GTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTGT
TGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTTG
TCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCGA
CATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAAA
GATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTAG
ATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGCA
CACGTCCGATACGTGCACA

MXO02461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 663..1113 469..19 2255 100 Minus
CG5854-PB 990 CG5854-RB 537..987 469..19 2255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 778..1228 469..19 2255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23935364..23935630 285..19 1335 100 Minus
3R 32079331 3R 23935114..23935297 469..286 920 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:53:22 has no hits.

MXO02461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:45 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 664..1116 16..468 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:57 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PB 538..990 16..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:25 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 779..1228 19..468 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:59 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 779..1228 19..468 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:59 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23935115..23935297 286..468 100 -> Minus
3R 23935364..23935630 19..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:25 Download gff for MXO02461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19760837..19761019 286..468 100 -> Minus
arm_3R 19761086..19761352 19..285 100   Minus

MXO02461.5prime Sequence

840 bp (517 high quality bases) assembled on 2006-12-21

> MXO02461.5prime
CAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTGGCTGCGGC
TTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAACTGGCGCA
GGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATGGCTAAACG
AGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCTGCAGCGCG
AACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCACACCCCAC
CACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGAGACGCGTG
CCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGCTCAGTTTG
AACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATACGTGGAACT
CAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAAAGAGGACT
GCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAG
AAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTCCGTTTGCC
CGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCGCATTATAA
TCGCTGCCATATACAAATACCTGAACGAGACAATGAAACTGCTGTGGAAC
GATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGCGCTGCCGT
TTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTACAACATCT
GCGATGATTCAGCATCGACGCACGGCACCATTAGTAATCTTTTAGTGGAT
ATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGT

MXO02461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 1..832 9..840 4110 99.7 Plus
CG5854-PB 990 CG5854-RB 1..706 135..840 3480 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 115..947 8..840 4135 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 216..585 1850 100 Plus
3R 32079331 3R 23935029..23935283 586..840 1245 99.2 Plus
3R 32079331 3R 23934170..23934344 42..216 875 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:10:29 has no hits.

MXO02461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:46 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..832 9..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:58 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..832 9..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:48 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 109..947 1..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:11 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 109..947 1..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:11 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23934564..23934932 217..585 100 -> Plus
3R 23934171..23934344 43..216 100 -> Plus
3R 23935029..23935283 586..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:48 Download gff for MXO02461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759893..19760066 43..216 100 -> Plus
arm_3R 19760286..19760654 217..585 100 -> Plus
arm_3R 19760751..19761005 586..840 99   Plus