MXO02461.3prime Sequence
469 bp (414 high quality bases) assembled on 2006-12-21
> MXO02461.3prime
ATGGTCTAGAAAGCTTGCAAGAACCAACGATTTCGGAAACAATTGCTGCT
TCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGGA
TGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGAG
GTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTGT
TGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTTG
TCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCGA
CATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAAA
GATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTAG
ATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGCA
CACGTCCGATACGTGCACA
MXO02461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 663..1113 | 469..19 | 2255 | 100 | Minus |
CG5854-PB | 990 | CG5854-RB | 537..987 | 469..19 | 2255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 778..1228 | 469..19 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23935364..23935630 | 285..19 | 1335 | 100 | Minus |
3R | 32079331 | 3R | 23935114..23935297 | 469..286 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:22 has no hits.
MXO02461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:45 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 664..1116 | 16..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:57 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PB | 538..990 | 16..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:25 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 779..1228 | 19..468 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:59 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 779..1228 | 19..468 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:59 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935115..23935297 | 286..468 | 100 | -> | Minus |
3R | 23935364..23935630 | 19..285 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:25 Download gff for
MXO02461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19760837..19761019 | 286..468 | 100 | -> | Minus |
arm_3R | 19761086..19761352 | 19..285 | 100 | | Minus |
MXO02461.5prime Sequence
840 bp (517 high quality bases) assembled on 2006-12-21
> MXO02461.5prime
CAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTGGCTGCGGC
TTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAACTGGCGCA
GGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATGGCTAAACG
AGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCTGCAGCGCG
AACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCACACCCCAC
CACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGAGACGCGTG
CCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGCTCAGTTTG
AACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATACGTGGAACT
CAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAAAGAGGACT
GCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCAAGGTGGAG
AAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTCCGTTTGCC
CGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCGCATTATAA
TCGCTGCCATATACAAATACCTGAACGAGACAATGAAACTGCTGTGGAAC
GATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGCGCTGCCGT
TTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTACAACATCT
GCGATGATTCAGCATCGACGCACGGCACCATTAGTAATCTTTTAGTGGAT
ATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGT
MXO02461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 1..832 | 9..840 | 4110 | 99.7 | Plus |
CG5854-PB | 990 | CG5854-RB | 1..706 | 135..840 | 3480 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 115..947 | 8..840 | 4135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 216..585 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935283 | 586..840 | 1245 | 99.2 | Plus |
3R | 32079331 | 3R | 23934170..23934344 | 42..216 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:10:29 has no hits.
MXO02461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:46 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..832 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:58 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..832 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:48 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 109..947 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:11 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 109..947 | 1..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:11 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23934564..23934932 | 217..585 | 100 | -> | Plus |
3R | 23934171..23934344 | 43..216 | 100 | -> | Plus |
3R | 23935029..23935283 | 586..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:48 Download gff for
MXO02461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759893..19760066 | 43..216 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 217..585 | 100 | -> | Plus |
arm_3R | 19760751..19761005 | 586..840 | 99 | | Plus |