MXO02462.3prime Sequence
921 bp (736 high quality bases) assembled on 2006-12-21
> MXO02462.3prime
ATGGTCTAGAAAGCTTGCCACATCGTACAATTTCATGTTCTCGATCTCGT
CCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAGG
CACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGGC
GAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAAA
TGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTTG
CGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTGA
TATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGCG
AATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGATC
ATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCGA
TACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGAA
ACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCACT
TCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTAG
ATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGCA
TAACACAGCGCAAACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAGG
ACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAGAAA
GCCGAGGGAGCCCAAATGGAAGGCCATGACGGGGGGCACAGATTGCTGGA
AGAGCAGCGAAGCATACAGCAGGGTGCCATCGCCACCCAGGCAAACTATA
AAGTCTATGCGATCGGTCAGATCATCTCGGCCATCTTTGAAAGTCACTAG
CTTATCCCGAATGGGCTTGAA
MXO02462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PC | 1128 | CG33156-RC | 223..1125 | 921..19 | 4490 | 99.8 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 460..1362 | 921..19 | 4490 | 99.8 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 568..1470 | 921..19 | 4490 | 99.8 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 457..1359 | 921..19 | 4490 | 99.8 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 799..981 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 601..689 | 903..815 | 195 | 88.7 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 685..773 | 903..815 | 195 | 88.7 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 301..389 | 903..815 | 195 | 88.7 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 148..83 | 155 | 89.3 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 148..83 | 155 | 89.3 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 148..83 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 527..1429 | 921..19 | 4500 | 99.9 | Minus |
| CG33156-RB | 1824 | CG33156-RB | 556..1458 | 921..19 | 4500 | 99.9 | Minus |
| CG33156-RE | 2330 | CG33156-RE | 1062..1964 | 921..19 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549536 | 304..886 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 13548610..13548896 | 19..305 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 13538198..13538468 | 304..574 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13538625..13538855 | 656..886 | 585 | 83.5 | Plus |
| 2R | 25286936 | 2R | 13537799..13538051 | 53..305 | 545 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:36 has no hits.
MXO02462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:48 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PE | 570..1473 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:59 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PB | 459..1362 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:39 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1062..1964 | 19..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:35 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1062..1964 | 19..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:35 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548610..13548894 | 19..303 | 100 | <- | Plus |
| 2R | 13548954..13549536 | 304..886 | 100 | <- | Plus |
| 2R | 13549599..13549633 | 887..921 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:39 Download gff for
MXO02462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436115..9436399 | 19..303 | 100 | <- | Plus |
| arm_2R | 9436459..9437041 | 304..886 | 100 | <- | Plus |
| arm_2R | 9437104..9437138 | 887..921 | 97 | | Plus |
MXO02462.5prime Sequence
889 bp (830 high quality bases) assembled on 2006-12-21
> MXO02462.5prime
CAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGGTTGCCTCG
TTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAATGTGAAGTG
GGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGAGCCAATTC
TAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCAGCTTGAAT
GCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATCATGAAAAA
CTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACGTCTCACCT
GGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCAGCGATGCC
TCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTGCAGGAGAA
GAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGTCCAGCTCA
ACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGACTTTCAAA
GATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTTTGCCTGGG
TGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCAATCTGTGC
CCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCACACCCTTC
CGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAGGGTCACGC
TGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCGCANGAGCG
ATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATGGTGAGGCG
CGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTCATTGATCG
TGGTCCATCGCCGTATCTGAGCAATATTGATCTGGTTCT
MXO02462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PB | 1362 | CG33156-RB | 1..876 | 9..884 | 4361 | 99.8 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 176..879 | 181..884 | 3501 | 99.8 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 285..987 | 182..884 | 3496 | 99.8 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..642 | 243..884 | 3191 | 99.8 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 272..392 | 214..334 | 330 | 90.9 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 356..476 | 214..334 | 330 | 90.9 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..92 | 243..334 | 260 | 91.3 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 601..689 | 483..571 | 195 | 88.7 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 685..773 | 483..571 | 195 | 88.7 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 301..389 | 483..571 | 195 | 88.7 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 430..485 | 375..430 | 155 | 91 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 514..569 | 375..430 | 155 | 91 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 130..185 | 375..430 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RB | 1824 | CG33156-RB | 100..980 | 9..889 | 4379 | 99.8 | Plus |
| CG33156-RF | 1795 | CG33156-RF | 242..951 | 180..889 | 3524 | 99.7 | Plus |
| CG33156-RA | 1874 | CG33156-RA | 322..1030 | 181..889 | 3519 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13549147..13549536 | 889..500 | 1924 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13549599..13549918 | 499..180 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 13549986..13550159 | 182..9 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 13539104..13539359 | 430..172 | 600 | 83 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 730..500 | 585 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:15 has no hits.
MXO02462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:49 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PB | 1..881 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:20:59 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PB | 1..881 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:13 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..980 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:13 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..980 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:13 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13549147..13549536 | 500..889 | 99 | <- | Minus |
| 2R | 13549599..13549916 | 182..499 | 100 | <- | Minus |
| 2R | 13549987..13550159 | 9..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:13 Download gff for
MXO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9437104..9437421 | 182..499 | 100 | <- | Minus |
| arm_2R | 9437492..9437664 | 9..181 | 100 | | Minus |
| arm_2R | 9436652..9437041 | 500..889 | 99 | <- | Minus |
