Clone MXO02463 Report

Search the DGRC for MXO02463

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:63
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG6540-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02463.3prime Sequence

781 bp (774 high quality bases) assembled on 2006-12-21

> MXO02463.3prime
ATGGTCTAGAAAGCTTGCCCAGCCGAATATCAGGTCCATGGCCTTGTCCA
TCAGACCGGAGCTCTTTTGCGGCACATCCTTCTGCGGCGATATGATGTTA
TCTTTGCGGGCCAGCTTGTACGACTGCTGGGAAAACGGTCGAATCGCACT
GGGGCTGGTGGGGGGATCTCCTATCTCTGCATTGGGCACAGAGCCGATGT
TCTCCTTATCGATCACCGACCTATCCGTGCAGCGCGACACGCCCACCATC
ACATTGCCGGCGATGATTTTTTCGTTGTAGTTCAGCGCCTTGTCGCTCTC
GATGCGCGAGGAGTAGCGCACATACATCCAGTTGCCGTTCTGCGGGGCAT
GCACCACGTCCACAATGGTGCCGCAGACGGTGAAGTGCTGCAGCACCATG
GAGCCGGCCCCCGGCGGGAACCCGAAGATGGTAACCCAAAAGTCGGATAG
GCGCGAGTTGCCGCCCGTCGTCACGGATGTGCCCAGGCCTCCAGCTGGCG
AGGCAGTGGCTCCAAGTGGCGAGCACAGTGCTCGCATCGAGGCATTGATG
GCATTGGGCGCCCCGGGTGCGAACGAGTCATTCGTGTGATAGCTGCTCTG
GTAGCTCTGGTTCGGTGACTGCAACTGCAGCATGCCAAGATGGTTCTTCT
TCTTCGGGGTGACGGACTGTTCGCGCAGCGAGTCGAAGAGTCCCTGGGTG
GGCGGTCCCGTCTGGTGGTGGCTGTGCGTCTGGCCGTGCGCGGTCGTTGA
GCTGTTGGCGCCCACAGCCGTGTGGGCGCCT

MXO02463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-PA 996 CG6540-RA 231..993 781..19 3815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 1249 CG6540-RA 355..1117 781..19 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18648595..18649357 781..19 3815 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:19 has no hits.

MXO02463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:51 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 231..996 15..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:00 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 231..996 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:29 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 355..1121 14..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:58 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 355..1121 14..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:58 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18648595..18649361 14..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:29 Download gff for MXO02463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18542628..18543394 14..781 99   Minus

MXO02463.5prime Sequence

789 bp (734 high quality bases) assembled on 2006-12-21

> MXO02463.5prime
CAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACAGTCCTGGC
TCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGATCCGCAAGG
TATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCGCTCTAATA
TAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGCTCAACCGC
TCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGCGCCCACAC
GGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGACGCACAGCC
ACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGCTGCGCGAA
CAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTGCAGTTGCA
GTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGACTCGTTCG
CACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCACTGTGCTCG
CCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACATCCGTGAC
GACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCATCTTCGGGT
TCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCGTCTGCGGC
ACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGGATGTATGT
GCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGACCTACAACGAAA
AATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTG

MXO02463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-PA 996 CG6540-RA 1..744 9..752 3695 99.8 Plus
CG6540-PA 996 CG6540-RA 741..782 748..789 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 1249 CG6540-RA 120..906 4..789 3880 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18648515..18649146 159..789 3095 99.7 Plus
X 23542271 X 18648301..18648456 4..159 765 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 21:58:09 has no hits.

MXO02463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:52 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 1..782 9..789 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:00 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 1..782 9..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:07 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 117..906 1..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:58 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 117..906 1..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:58 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18648298..18648456 1..159 98 -> Plus
X 18648516..18649146 160..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:07 Download gff for MXO02463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18542331..18542489 1..159 98 -> Plus
arm_X 18542549..18543179 160..789 99   Plus