MXO02464.3prime Sequence
831 bp (793 high quality bases) assembled on 2006-12-21
> MXO02464.3prime
ATGGTCTAGAAAGCTTGCCTTGTCATCCTCATCCTCTTCCTCTTCCTCGC
CTTCTCCATCCTCACCGTCCTCGTCGTCAAATGCCTCCTCATCATTATCT
TCGTTGTCCTCCTCGTCCTCGGGCTCCACCTCGATATCAGGTACCAGATA
ATACTGCAGTGGATTTGGCCAAAGGTCGTCTTTTATCAGTTCTGCGATCT
CGTCGTTGACGGGATCGGTGTTATCCGAGAACCAATCGAAGAAGGTTTTG
TATTCGGAGTTGCGCTTCTTCTTGTTTCCGTACGGCTTTGTCAGCAAAAG
TTTTAGCAGGTTCTTTCCCTCCTTCCATTTGATGGGCGTGCTGGTAGACG
CGGGCCAGTCTCCGTTCTCGGAAGCAGCCGCTGAATTCAGGTGGAACTCT
TTGGTGAGCACCTTGTTTTCGAAGTAAGGATTCTCGTCGAAATGGAAGTT
GATGCGGTAACCCGATTTGATGTCCTCAAACTCCTCAACCTCAAGTTTGT
TGAGCGCGTGCAGGCACTCCTCCTCCTCCTCGTCCAGAATGCCGGATACT
TGCGGGTGGTTGATAAACGAGGTCACCCAAAAGTTGGGGATGCGCTTGAC
CAGCTCGCTGCGCTTCTCGTAGCAGGGCTTCCGCAGCTTGTTGTACTTCT
GCTCCACCTTGAGGATCTCCTCGCTGGCCTTCTCGTTCAGCGCATCGATC
TCGTTCTGGCAGGCATCAATTTGCTCCAACGCCTCCGACTCCTCCTCGTT
GTTACCGGCGGCGGCGGATGTGTTGCCATCGGCGGGGGCGCCGTCCAGCT
TGGCTCGCTTTGGCACGCTCGACATGTCGAC
MXO02464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..942 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 378..27 | 1760 | 100 | Minus |
3R | 32079331 | 3R | 15263687..15263944 | 825..568 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 15264352..15264542 | 568..378 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:52 has no hits.
MXO02464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:54 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..810 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:00 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..810 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:45 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 129..948 | 12..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:46 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 129..948 | 12..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:46 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263680..15263944 | 568..831 | 98 | -> | Minus |
3R | 15264353..15264542 | 378..567 | 100 | -> | Minus |
3R | 15264605..15264955 | 27..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:45 Download gff for
MXO02464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089402..11089666 | 568..831 | 98 | -> | Minus |
arm_3R | 11090075..11090264 | 378..567 | 100 | -> | Minus |
arm_3R | 11090327..11090677 | 27..377 | 100 | | Minus |
MXO02464.5prime Sequence
815 bp (546 high quality bases) assembled on 2006-12-21
> MXO02464.5prime
CAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACGGCGCCCCC
GCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAGGAGTCGGA
GGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGCGCTGAACG
AGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAATACAACAAGCTGC
GGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGCATCCCCAAC
TTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGGCATTCTGGA
CGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTGAGGTTGAGG
AGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCATTTCGACAAG
AATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCACCTGAATTC
AGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCAGCACGCCCA
TCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTGACAAAGCCG
TACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTTCTTCGATTG
GTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAGAACTGATAA
AAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTACCTGATATC
GAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGATGAGGAGGC
ATTTGACGACGAGGACGGTGAGGATGGAGAACGCGAGGAAGATGAAGAGG
ATGAGGATGACACGG
MXO02464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 181..805 | 188..812 | 3050 | 99.5 | Plus |
CG4299-PA | 810 | Set-RA | 1..179 | 9..187 | 895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..940 | 9..812 | 3955 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 455..806 | 1730 | 99.4 | Plus |
3R | 32079331 | 3R | 15263687..15263944 | 9..265 | 1240 | 99.6 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 265..455 | 940 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:06 has no hits.
MXO02464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:55 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..807 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:01 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..807 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:05 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 128..942 | 1..815 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:55 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 128..942 | 1..815 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:55 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263679..15263944 | 1..265 | 98 | -> | Plus |
3R | 15264353..15264542 | 266..455 | 99 | -> | Plus |
3R | 15264605..15264955 | 456..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:05 Download gff for
MXO02464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089401..11089666 | 1..265 | 98 | -> | Plus |
arm_3R | 11090075..11090264 | 266..455 | 99 | -> | Plus |
arm_3R | 11090327..11090677 | 456..806 | 99 | | Plus |