MXO02465.3prime Sequence
868 bp (782 high quality bases) assembled on 2006-12-21
> MXO02465.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCAGCGCCGCCGTCTCCAGCTTCGGAG
CCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGCA
CGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCGT
GTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCGG
CGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAGC
ACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACGA
GGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTGG
AGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCCC
GCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGTA
GAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGCA
GCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGATG
CAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGAT
GCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTCT
TGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTCC
ACCTCGTANGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCCA
GCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGCT
GCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTGG
GTCCCTGGCACCAGGGAT
MXO02465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 60..891 | 850..19 | 4141 | 99.8 | Minus |
CG7349-PA | 1314 | CG7349-RA | 635..750 | 689..574 | 455 | 95.6 | Minus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 344..307 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 171..1020 | 868..19 | 4179 | 99.5 | Minus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 725..107 | 1044 | 79 | Minus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 725..107 | 1044 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 849..409 | 2194 | 99.8 | Minus |
2R | 25286936 | 2R | 6808579..6808973 | 413..19 | 1960 | 99.7 | Minus |
X | 23542271 | X | 18895391..18895889 | 725..224 | 834 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:42 has no hits.
MXO02465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:57 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 42..894 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:01 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 42..894 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:17 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 171..1020 | 19..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:28 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 171..1020 | 19..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:28 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6808087..6808526 | 410..849 | 99 | -> | Minus |
2R | 6808583..6808973 | 19..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:17 Download gff for
MXO02465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695592..2696031 | 410..849 | 99 | -> | Minus |
arm_2R | 2696088..2696478 | 19..409 | 100 | | Minus |
MXO02465.5prime Sequence
718 bp (370 high quality bases) assembled on 2006-12-21
> MXO02465.5prime
CAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCCGCGTGGGA
TCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGCACCGCCCA
GCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCAGATCAAGA
AGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGAAGCCGTAC
ATGCAGACCTACGAGGTGGACCTGCGCGAGAGCGGACCCATGGTGCTGGA
CGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCACCTTTAGGC
GCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACATCGGCGGC
ACCAACACGCTGGCCTGCATCACCAGGATCGACATCAACACCTCCGAGTC
GCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGGGCACGACCTGTTCC
CGGACATGAACAACTTCTACAAGCAGTACCGCAACATCCAGCCCTGGCTG
CAGCGCAAGAACGAAGCGGGCGAGAAGAAGGACAAGGCCCAGTACCTGGA
GGCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTGCATCCTGT
GCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACGCCGAGAAG
TACCTGGGCCCCGCCGAGCTGATGAACGCCTACCGCTGGATCATCTACTC
GCGTGACGAGAACTCCGC
MXO02465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 1..710 | 9..718 | 3150 | 97.7 | Plus |
CG7349-PA | 1314 | CG7349-RA | 644..750 | 238..344 | 435 | 96.2 | Plus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 574..611 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 130..839 | 9..718 | 3310 | 97.7 | Plus |
CG7349-RC | 1949 | CG7349-RC | 815..1313 | 193..694 | 815 | 78.7 | Plus |
CG7349-RA | 1888 | CG7349-RA | 754..1252 | 193..694 | 815 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 69..509 | 2070 | 98 | Plus |
2R | 25286936 | 2R | 6808579..6808792 | 505..718 | 950 | 96.3 | Plus |
X | 23542271 | X | 18895391..18895889 | 193..694 | 690 | 77.2 | Plus |
2R | 25286936 | 2R | 6807755..6807817 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:37 has no hits.
MXO02465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:58 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 1..710 | 9..718 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:02 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 1..710 | 9..718 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:28 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..839 | 1..718 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..839 | 1..718 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:26 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807747..6807817 | 1..71 | 94 | -> | Plus |
2R | 6808090..6808526 | 72..508 | 97 | -> | Plus |
2R | 6808583..6808792 | 509..718 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:28 Download gff for
MXO02465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695252..2695322 | 1..71 | 94 | -> | Plus |
arm_2R | 2695595..2696031 | 72..508 | 97 | -> | Plus |
arm_2R | 2696088..2696297 | 509..718 | 96 | | Plus |