Clone MXO02465 Report

Search the DGRC for MXO02465

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:65
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSdhB-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02465.3prime Sequence

868 bp (782 high quality bases) assembled on 2006-12-21

> MXO02465.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCAGCGCCGCCGTCTCCAGCTTCGGAG
CCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGCA
CGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCGT
GTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCGG
CGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAGC
ACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACGA
GGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTGG
AGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCCC
GCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGTA
GAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGCA
GCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGATG
CAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGAT
GCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTCT
TGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTCC
ACCTCGTANGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCCA
GCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGCT
GCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTGG
GTCCCTGGCACCAGGGAT

MXO02465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 60..891 850..19 4141 99.8 Minus
CG7349-PA 1314 CG7349-RA 635..750 689..574 455 95.6 Minus
CG7349-PA 1314 CG7349-RA 977..1014 344..307 165 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 171..1020 868..19 4179 99.5 Minus
CG7349-RC 1949 CG7349-RC 815..1430 725..107 1044 79 Minus
CG7349-RA 1888 CG7349-RA 754..1369 725..107 1044 79 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 849..409 2194 99.8 Minus
2R 25286936 2R 6808579..6808973 413..19 1960 99.7 Minus
X 23542271 X 18895391..18895889 725..224 834 78.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:42 has no hits.

MXO02465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:57 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 42..894 18..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:01 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 42..894 18..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:17 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 171..1020 19..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:28 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 171..1020 19..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:28 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6808087..6808526 410..849 99 -> Minus
2R 6808583..6808973 19..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:17 Download gff for MXO02465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695592..2696031 410..849 99 -> Minus
arm_2R 2696088..2696478 19..409 100   Minus

MXO02465.5prime Sequence

718 bp (370 high quality bases) assembled on 2006-12-21

> MXO02465.5prime
CAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCCGCGTGGGA
TCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGCACCGCCCA
GCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCAGATCAAGA
AGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGAAGCCGTAC
ATGCAGACCTACGAGGTGGACCTGCGCGAGAGCGGACCCATGGTGCTGGA
CGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCACCTTTAGGC
GCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACATCGGCGGC
ACCAACACGCTGGCCTGCATCACCAGGATCGACATCAACACCTCCGAGTC
GCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGGGCACGACCTGTTCC
CGGACATGAACAACTTCTACAAGCAGTACCGCAACATCCAGCCCTGGCTG
CAGCGCAAGAACGAAGCGGGCGAGAAGAAGGACAAGGCCCAGTACCTGGA
GGCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTGCATCCTGT
GCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACGCCGAGAAG
TACCTGGGCCCCGCCGAGCTGATGAACGCCTACCGCTGGATCATCTACTC
GCGTGACGAGAACTCCGC

MXO02465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 1..710 9..718 3150 97.7 Plus
CG7349-PA 1314 CG7349-RA 644..750 238..344 435 96.2 Plus
CG7349-PA 1314 CG7349-RA 977..1014 574..611 165 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 130..839 9..718 3310 97.7 Plus
CG7349-RC 1949 CG7349-RC 815..1313 193..694 815 78.7 Plus
CG7349-RA 1888 CG7349-RA 754..1252 193..694 815 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 69..509 2070 98 Plus
2R 25286936 2R 6808579..6808792 505..718 950 96.3 Plus
X 23542271 X 18895391..18895889 193..694 690 77.2 Plus
2R 25286936 2R 6807755..6807817 9..71 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:47:37 has no hits.

MXO02465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:28:58 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 1..710 9..718 97   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:02 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 1..710 9..718 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:28 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..839 1..718 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..839 1..718 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:26 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6807747..6807817 1..71 94 -> Plus
2R 6808090..6808526 72..508 97 -> Plus
2R 6808583..6808792 509..718 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:28 Download gff for MXO02465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695252..2695322 1..71 94 -> Plus
arm_2R 2695595..2696031 72..508 97 -> Plus
arm_2R 2696088..2696297 509..718 96   Plus