Clone MXO02466 Report

Search the DGRC for MXO02466

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:66
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTango7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02466.3prime Sequence

883 bp (850 high quality bases) assembled on 2006-12-21

> MXO02466.3prime
ATGGTCTAGAAAGCTTGCGTGTATCAGCTTCTGGGATCGAGCCAGATCCA
GTTGCGCCGAGGAGACGCTCGTTAGACCCTCGCGCACTGTGCTGAGGTTC
TCCTTCCATGCCTGCAGCAAATCGCGAAGCTGCTCCCATTGTGGTGCTCC
AAAGGTTCGGTGCATTGTCGATGAGATGTGTACCTTTTGATTGGCCTGAT
CTAGTCGTGCGCGTACCAGCTTTGTTTTCAGCACCTCGATGACGAAGGGC
TCCACCTCGTCTTCGTTGATCTGCAGCTCCTTGGTAAGCGTTTCGAATGT
CATCTCCGGGCTGCTCTCGGCCAGCTGCATGAAGGTCAGCAGACGCATCT
TCTTCATGTTCTGCTCATGGTTCAATCCTTGCGAGTTGACAAACTCCCTG
TGATCCTCGTAGAACTGCACGTACGCTGGCAGCTTCTCGGACACGAAGAT
GGACAGCAGGTCGTGGATGAGGTCGCCTTCCAAAAAGCGCACAGGCTTCA
GCGACAGCAGAGGATCCAGCAGGAATGTATTGGGGTCGGCCAAGGCAGTC
ACAATGCACTTCATGGCATCCTCACGGGCAACACAAGCATTGTCCGCCGT
GTAGGTGCCCAGCAGCTCAATCATAACCTTGGAAGACAGCTCCAGGTTGG
TGTCCTTGGTCACGTCGTGCAGCAGGCGGTACAGCTTCTGCATCTGTTCC
GACGAAGGTGGGCAGTTGGCAAACTGGGATTTGAGCTGATCCACACCTGA
GAAGACCTCCAGCACCTGTTCGCACTGCTTGGCCACCTGGACCAGGTGGT
AGTACACATGGTAGCGTAAGGGAGAGGCGGTGTCCAGGTTGTTGAACAGA
CGCCACAACGACTGGAGGCACACCTTTGCCAAT

MXO02466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8309-PA 1164 CG8309-RA 304..1161 876..19 4265 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tango7-RB 1386 CG8309-RB 387..1251 883..19 4280 99.7 Minus
Tango7-RA 1590 CG8309-RA 591..1455 883..19 4280 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14163201..14164065 19..883 4280 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 19:37:48 has no hits.

MXO02466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:00 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8309-PA 297..1164 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:02 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8309-PA 297..1164 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:30 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango7-RA 591..1460 13..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:02 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango7-RA 591..1460 13..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:02 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14163196..14164065 13..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:30 Download gff for MXO02466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10050701..10051570 13..883 99   Plus

MXO02466.5prime Sequence

797 bp (796 high quality bases) assembled on 2006-12-21

> MXO02466.5prime
CAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCCTGGACGAG
CAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCCGAAATCTC
ATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAAGATCATCG
GCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGATTGATGGA
ATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTGGATCGCGG
TGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGCTCCCAATC
TTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGTTCAACAAC
CTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCACCTGGTCCA
GGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGGTGTGGATC
AGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAACAGATGCAG
AAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAACCTGGAGCT
GTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGCGGACAATG
CTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTGCCTTGGCC
GACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAGCCTGTGCG
CTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTTCGTGTCCG
AGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGGAGTTT

MXO02466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8309-PA 1164 CG8309-RA 1..789 9..797 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tango7-RB 1386 CG8309-RB 90..879 8..797 3950 100 Plus
Tango7-RA 1590 CG8309-RA 294..1083 8..797 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14163573..14164137 797..233 2825 100 Minus
2R 25286936 2R 14164191..14164372 233..52 910 100 Minus
2R 25286936 2R 14164485..14164532 55..8 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:59 has no hits.

MXO02466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:02 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8309-PA 1..789 9..797 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:02 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8309-PA 1..789 9..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:27 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango7-RA 294..1083 8..797 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:38 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango7-RA 294..1083 8..797 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:38 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14163573..14164136 234..797 100 <- Minus
2R 14164191..14164370 54..233 100 <- Minus
2R 14164487..14164532 8..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:27 Download gff for MXO02466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10051078..10051641 234..797 100 <- Minus
arm_2R 10051696..10051875 54..233 100 <- Minus
arm_2R 10051992..10052037 8..53 100   Minus