MXO02467.3prime Sequence
913 bp (769 high quality bases) assembled on 2006-12-21
> MXO02467.3prime
ATGGTCTAGAAAGCTTGCGCCGATCATCAGCCCGCAGCCGAGTCTAAAGT
TGTTCTTCACGTGGTTCATGCGTCCGCTCAGGGCTAGTGTGAATGGCAAT
GGAGCCAGACGCTTCTCCAAAACACCAAAGATTTGCCAGTTGGAATCAAT
TCCGCCTCTGAAGACCAGATTCGCTTTGGGCAGATCGATCTGATACGCTA
ACGTGGCCACCGACTCCTGCATCCGCAGACTGGTCTCCACCTCGGCACCG
ATCTGCAGCTGGTCGCTGGCCTTCTGGTAGTAGCACACGTGCAGACCGCT
CTGACCCAGAGTCCCCGACCACACCGAGCTTCCAGCCGTATAGCGGCCCA
CGACGGACATAATAGCTATCTGACGGCCGGGGACGTTCGGACCGAACTGG
TAGGCCAGTTCGGAGCCCAGGGCGAGGGCTGGAGTGACTGACTGGAGATA
TTGGCCAACGACCACGCCGGAGTTGGTGAATATGCTGGGATTGGCCACCG
TCAGCGAGAGGGTGTAATCACTACCGCGATAGTCGGTCGTCAGCTGTGAG
GCCACCACCTTGGACTCCTGGATCTGCGAAGCGAATTTGCAGCGCAGACG
GGCAGAGAACTGATGGATAACATTGGCGTTGAGGTTGCCAGCCGGATCGA
TGTCGCCCAGGAGCACGGGAAAAGCTTCCGTGGGGCTGAACTCCTTGGTG
CCCACATAGGTGGCTCCGAAGCGATATCCACTGGGTACCACATTGCTCAT
GTTGATGGTGTGCGACACCTGNAAGTGGTTGCTCANGCCCTTGGTCAGCA
TGATCTTGGCGCCCTCGAAGGTGATGGCCTGGATATCTTTGCACTTTTTG
TGAAGCTCCTCAACGGTGCCGGGGATCTCCAGCGCTGCGTCCTTGGCGGG
CGGCAGTGAGTCC
MXO02467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12157-PA | 1035 | Tom40-RA | 152..1032 | 899..19 | 4292 | 99.4 | Minus |
| CG12157-PB | 1035 | Tom40-RB | 152..1032 | 899..19 | 4292 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom40-RC | 2395 | CG12157-RC | 560..1454 | 913..19 | 4363 | 99.2 | Minus |
| Tom40-RB | 1861 | CG12157-RB | 432..1326 | 913..19 | 4363 | 99.2 | Minus |
| Tom40-RA | 1676 | CG12157-RA | 247..1141 | 913..19 | 4363 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7738379..7738800 | 576..155 | 2110 | 100 | Minus |
| X | 23542271 | X | 7737871..7738135 | 838..574 | 1288 | 98.9 | Minus |
| X | 23542271 | X | 7738899..7739037 | 157..19 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 6225929..6226628 | 834..135 | 523 | 71.6 | Minus |
| X | 23542271 | X | 7737607..7737687 | 913..833 | 300 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:17 has no hits.
MXO02467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:03 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-PB | 138..1035 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:03 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12157-PB | 138..1035 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:02 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 255..1154 | 13..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:24 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 247..1146 | 13..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:24 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7737607..7737683 | 837..913 | 94 | -> | Minus |
| X | 7737873..7738135 | 574..836 | 98 | -> | Minus |
| X | 7738382..7738799 | 156..573 | 100 | -> | Minus |
| X | 7738901..7739042 | 13..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:02 Download gff for
MXO02467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7631640..7631716 | 837..913 | 94 | -> | Minus |
| arm_X | 7631906..7632168 | 574..836 | 98 | -> | Minus |
| arm_X | 7632415..7632832 | 156..573 | 100 | -> | Minus |
| arm_X | 7632934..7633075 | 13..155 | 98 | | Minus |
MXO02467.5prime Sequence
848 bp (803 high quality bases) assembled on 2006-12-21
> MXO02467.5prime
CAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCCCAGGCAGT
GGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCCCTGCCCTC
TAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGGCTTGGACT
CACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCACCGTTGAG
GAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTCGAGGGCGC
CAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGTGTCGCACA
CCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCGGAGCCACC
TATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCCGTGCTCCT
GGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTATCCATCAGT
TCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGGAGTCCAAG
GTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGATTACACCCT
CTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGGCGTGGTCG
TTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGGGCTCCGAA
CTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATAGCTATTAT
GTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTCGGGGACTC
TGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCAGCGACCAG
CTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAGGAGTCG
MXO02467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12157-PA | 1035 | Tom40-RA | 1..840 | 9..848 | 4200 | 100 | Plus |
| CG12157-PB | 1035 | Tom40-RB | 1..840 | 9..848 | 4200 | 100 | Plus |
| CG8330-PA | 1023 | tomboy40-RA | 205..292 | 225..312 | 190 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom40-RC | 2395 | CG12157-RC | 418..1262 | 4..848 | 4210 | 99.9 | Plus |
| Tom40-RB | 1861 | CG12157-RB | 290..1134 | 4..848 | 4210 | 99.9 | Plus |
| Tom40-RA | 1676 | CG12157-RA | 105..949 | 4..848 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7738379..7738744 | 483..848 | 1830 | 100 | Plus |
| X | 23542271 | X | 7737871..7738135 | 221..485 | 1325 | 100 | Plus |
| X | 23542271 | X | 7737465..7737687 | 4..226 | 1085 | 99.1 | Plus |
| 2R | 25286936 | 2R | 6225929..6226275 | 225..571 | 520 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:11:10 has no hits.
MXO02467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:05 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-PB | 1..840 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:04 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12157-PB | 1..840 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:15 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 110..957 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:33 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom40-RA | 102..949 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:33 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7737462..7737683 | 1..222 | 99 | -> | Plus |
| X | 7737873..7738135 | 223..485 | 100 | -> | Plus |
| X | 7738382..7738744 | 486..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:15 Download gff for
MXO02467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7631495..7631716 | 1..222 | 99 | -> | Plus |
| arm_X | 7631906..7632168 | 223..485 | 100 | -> | Plus |
| arm_X | 7632415..7632777 | 486..848 | 100 | | Plus |
