Clone MXO02468 Report

Search the DGRC for MXO02468

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:68
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5315-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02468.3prime Sequence

849 bp (778 high quality bases) assembled on 2006-12-21

> MXO02468.3prime
ATGGTCTAGAAAGCTTGCAAAGGTTATTGGTTCGATGGGAACAGTGCATT
CGCTATACATGACGCGGTACATGGCCATTTCAGAGATGCCATGGTAGTGG
ACAAAAGCGGCCGCAATGACCAGTATGTGGAATATTTGATGTGATTGACC
CCAAATGTCAAACTTTCCAGGGAACCAGCGTTCGGGAACACGGAGGGCGT
ACAGCAGTGCGCCCAGAATGTAGAGGAGGCCCATCAGAATTAGCCATCCC
AGACTGGCGCGGCTCATCTGGCTGAACCAGCCCTCCATGATGCTGTAGTG
AATAGCTGGAATCACACCCGACAGGCCAAAGCTCATAAATACGCCAGCGC
GCAAGGGACGAAGTGCCGGCTCCGAAAACTTGTCCCATAGCGAGACCACG
ATGGAGAGGATGCCCAGAATGCTAACAACGGATAGGTATATCACCTTTGG
CTGGTAATGACAGTAGAAGCCATAGTACAGCCAAGGCACAAAGGAACCCA
TGATCAGCAGCGCAATTCCACAGTAGTCAAGTTTAGAAAACAGTCTTCCC
ATCTCTACAGAATGACAGCTCAGTGTGTGAAAAGCGAATGAGAATCCTAG
GCACACAATCGCACCGATAAAGAAGGCGCCAAAAACGATCTTCTCCTGTG
TCTGGATCTCAACCGAGGGACGCGAGATGAAGTATAATGCCACGCCGATG
AAGGCGATGCAGCCAAGAAGATGTGTCCAGATGTTGCCCGTTTCCGTGTG
CACGCGGAAAATTGATTTAAAGCACGCACGGAAAGAGGGGAGCGGTGGGC
GATGGCCGCGGTGTAGGAAGTCGTTATCCTGCAGCCACTTGGGTAGATT

MXO02468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5315-PC 1335 CG5315-RC 502..1332 849..19 4155 100 Minus
CG5315-PB 1089 CG5315-RB 256..1086 849..19 4155 100 Minus
CG5315-PA 1335 CG5315-RA 502..1332 849..19 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
AdipoR-RE 1869 CG5315-RE 730..1560 849..19 4155 100 Minus
AdipoR-RD 1875 CG5315-RD 736..1566 849..19 4155 100 Minus
AdipoR-RA 2299 CG5315-RA 736..1566 849..19 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22545118..22545434 533..849 1585 100 Plus
3R 32079331 3R 22544757..22545059 230..532 1515 100 Plus
3R 32079331 3R 22544426..22544558 19..151 665 100 Plus
3R 32079331 3R 22544614..22544695 150..231 410 100 Plus
Blast to na_te.dros performed 2014-11-28 20:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 152..188 514..478 113 78.4 Minus

MXO02468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:07 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-PB 256..1089 18..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:04 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-PA 502..1335 18..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:22 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 736..1566 19..849 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:47 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
AdipoR-RA 736..1566 19..849 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:47 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22544758..22545059 231..532 100 <- Plus
3R 22545118..22545434 533..849 100   Plus
3R 22544426..22544557 19..150 100 <- Plus
3R 22544615..22544694 151..230 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:22 Download gff for MXO02468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18370148..18370279 19..150 100 <- Plus
arm_3R 18370337..18370416 151..230 100 <- Plus
arm_3R 18370480..18370781 231..532 100 <- Plus
arm_3R 18370840..18371156 533..849 100   Plus

MXO02468.5prime Sequence

908 bp (836 high quality bases) assembled on 2006-12-21

> MXO02468.5prime
CAGTCGACATGGATTCGGCCACTAATCTCCTCGAGCAACAGGGCTCAGCG
GCTGATGTGAGTGGCGGGAGCCATCCCGCCGAGGTGGAGGTAACCACCCA
GGCTCGAGCCACTTTCGGCATGGACGCCGAAGGACATGCTACCGGCGAGG
CGGTGACCACCACCACGGCCACCTTGCGTAGAGAAGGTTCAGACGAGGAT
ATCTTTGAGCAGGTGCAGATGATCCTGCGCAAGCGACGTGGCTGGGGACC
GGAGGACTCGCTTAGCCCCAATGATCTGGACATTCTGGAGTACGACGATG
AGTTGGTCGAGGAGGATGACGCCGGTTGTCCACTCCCCTCGACCCCGGAG
GACACACAGCTTATTGAGGCGGAGATGACGGAAGTGCTGAAGGCCGGAGT
TCTCTCCGATGAAATTGATTTGGGCGCATTGGCACACAATGCCGCCGAGC
AGGCAGAGGAGTTTGTGCGCAAGGTCTGGGAGGCTAGCTGGAAAGTGTGC
CACTACAAAAATCTACCCAAGTGGCTGCAGGATAACGACTTCCTACACCG
CGGCCATCGCCCACCGCTCCCCTCTTTCCGTGCGTGCTTTAAATCAATTT
TCCGCGTGCACACGGAAACGGGCAACATCTGGACACATCTTCTTGGCTGC
ATCGCCTTCATCGGCGTGGCATTATACTTCATCTCGCGTCCCTCGGTTGA
GATCCAGACACAGGAGAAGATCGTTTTTGGCGCCTTCTTTATCGGTGCGA
TTGTGTGCCTAGGATTCTCATTCGCTTTTCACACACTGAGCTGTCATTCT
GTAGAGATGGGAAGACTGTTTTCTAAACTTGACTACTGTGGAATTGCGCT
GCTGATCATGGGTTCCTTTGTGCCTTGGCTGTACTATGGCTTCTACTGTC
ATTACCAC

MXO02468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5315-PC 1335 CG5315-RC 1..899 9..907 4495 100 Plus
CG5315-PA 1335 CG5315-RA 1..899 9..907 4495 100 Plus
CG5315-PB 1089 CG5315-RB 121..653 375..907 2665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
AdipoR-RE 1869 CG5315-RE 228..1127 8..907 4500 100 Plus
AdipoR-RD 1875 CG5315-RD 234..1133 8..907 4500 100 Plus
AdipoR-RA 2299 CG5315-RA 234..1133 8..907 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22546708..22547078 378..8 1840 99.7 Minus
3R 32079331 3R 22545118..22545472 826..472 1775 100 Minus
3R 32079331 3R 22545683..22545785 475..373 515 100 Minus
3R 32079331 3R 22544979..22545059 907..827 405 100 Minus
Blast to na_te.dros performed 2014-11-28 21:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 152..188 845..881 113 78.4 Plus

MXO02468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:08 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-PC 1..899 9..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:05 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-PA 1..899 9..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:19 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5315-RA 226..1133 1..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:47 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
AdipoR-RA 226..1133 1..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:47 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22544977..22545059 827..908 98 <- Minus
3R 22545118..22545470 474..826 100 <- Minus
3R 22545685..22545783 375..473 100 <- Minus
3R 22546712..22547082 1..374 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:19 Download gff for MXO02468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18372434..18372804 1..374 98   Minus
arm_3R 18370699..18370781 827..908 98 <- Minus
arm_3R 18370840..18371192 474..826 100 <- Minus
arm_3R 18371407..18371505 375..473 100 <- Minus