Clone MXO02469 Report

Search the DGRC for MXO02469

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:69
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRnpS1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02469.3prime Sequence

900 bp (838 high quality bases) assembled on 2006-12-21

> MXO02469.3prime
ATGGTCTAGAAAGCTTGCACGAGAGCTGTCACTGCTATTGCTGCGGCGTC
GACGACGAATGGGGGAGCGGGAGCGACGCCGTGGTGAACGCCGGTTCCTC
ATGGGTGACTGACGACGTCCGCCGCCGCCGCCACCACCTCCTCCACGATT
GTTGAACCTATTGAACTGGGGTGGGGATCGCCAGCGGTTGTTTTGCGGAC
GGCGCATCGGTGGCGAAGGACGACGCATGGGCGGCCTCTGTTTTACTAAG
ACAACCGGGGATACCGTAATCTCCTGGCCATCTATCTGCCCGCCATCCAT
ATGCTTCATGGCCGACTCACAATCCTCGGGTGTGGCATATTCCACAAACG
CCACGCCGCGTCCGAAGTTAGGATGAAAACGATCTACGGGAAACTCCACA
TTCTTCACATCCCCAAAGCTGCTAAATATCTCGAACACATGGTCCTTGGT
AACGTTGCGGGTAAGCCGACCGACATGAATGCGCACCTGTTTGGGCGAAG
GCGAGCGAGTCCGCGAACGGGAGCGCTCCCTTCGCTTCGGTGGCGGCGTC
CTCTCAACGGAGCCGCGACCACGACGGCGTGGCGATCGTGAACGACTGGC
TGAGCGAGAACGCTCCCGCTTAACATTATTGCTATCGGCGGCTGCCCTAT
CGTTGGATCCAGCACGGCGGGCACGATCCCTCGACCGACTACGACGATCG
CGATCTCGCTCCGGCTCTTTTCGCGCCTTGCTGCCCGGTCTTGGAGATTT
GGAGACACGCCTGGGGGAACGGGTGCGAGAGCGGGAACGTGATCGGGCGC
TGGGCTTATCCTTGTCTTTGTCTTTTGCAGCAGCGCCGCCCGCACGTCTT
CGGTTCTTCTCGCTGCGATCCGAATCGCTGGACGACGATGATGAGGAGCT

MXO02469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG16788-PA 1125 RnpS1-RA 241..1122 900..19 4310 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1370 CG16788-RA 390..1271 900..19 4350 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9552767..9553648 900..19 4350 99.5 Minus
Blast to na_te.dros performed on 2014-11-28 19:11:46 has no hits.

MXO02469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:10 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-PA 241..1125 18..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:05 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16788-PA 241..1125 18..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:46 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 390..1271 19..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:40 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 390..1271 19..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:40 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9552767..9553648 19..900 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:46 Download gff for MXO02469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5378489..5379370 19..900 99   Minus

MXO02469.5prime Sequence

691 bp (126 high quality bases) assembled on 2006-12-21

> MXO02469.5prime
CAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTGAGAAGGAA
AAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCGAGGCGACCAG
CGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATCGGCGTCCT
CCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCGGCTCTTCGCGGAGC
AGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGACTCCTCGAG
CTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAAGAACCGAA
GACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATAAGCCCAGC
GCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGTGTCTCCAA
ATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCGAGATCGCG
ATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGATCCAACGAT
AGGGCAGCCGCCGATAGCATTAATGTTAAGCGGGAGCGTTCTCGCTCAGC
CAGTCGTTCGCGATCGCCACGCCGTCGTGGTCGCGGCTCCGTTGAGAGGA
CGCCGCCACCGAATCGAACGTAGCGCTCCCGTTCGCGGACTCGCTCGCCT
TCCCTCAATCCGGTGCGCATTCGTGTCGGTCGGCTTACCCG

MXO02469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16788-PA 1125 RnpS1-RA 1..644 9..652 3045 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1370 CG16788-RA 150..832 9..691 3235 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9552688..9553209 170..691 2445 97.9 Plus
3R 32079331 3R 9552257..9552422 7..172 800 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:01:10 has no hits.

MXO02469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:12 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-PA 1..683 9..691 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:05 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16788-PA 1..683 9..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:57 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 140..832 1..691 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:21 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 140..832 1..691 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:21 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9552257..9552422 7..172 98 -> Plus
3R 9552691..9553209 173..691 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:57 Download gff for MXO02469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5377979..5378144 7..172 98 -> Plus
arm_3R 5378413..5378931 173..691 97   Plus