MXO02469.3prime Sequence
900 bp (838 high quality bases) assembled on 2006-12-21
> MXO02469.3prime
ATGGTCTAGAAAGCTTGCACGAGAGCTGTCACTGCTATTGCTGCGGCGTC
GACGACGAATGGGGGAGCGGGAGCGACGCCGTGGTGAACGCCGGTTCCTC
ATGGGTGACTGACGACGTCCGCCGCCGCCGCCACCACCTCCTCCACGATT
GTTGAACCTATTGAACTGGGGTGGGGATCGCCAGCGGTTGTTTTGCGGAC
GGCGCATCGGTGGCGAAGGACGACGCATGGGCGGCCTCTGTTTTACTAAG
ACAACCGGGGATACCGTAATCTCCTGGCCATCTATCTGCCCGCCATCCAT
ATGCTTCATGGCCGACTCACAATCCTCGGGTGTGGCATATTCCACAAACG
CCACGCCGCGTCCGAAGTTAGGATGAAAACGATCTACGGGAAACTCCACA
TTCTTCACATCCCCAAAGCTGCTAAATATCTCGAACACATGGTCCTTGGT
AACGTTGCGGGTAAGCCGACCGACATGAATGCGCACCTGTTTGGGCGAAG
GCGAGCGAGTCCGCGAACGGGAGCGCTCCCTTCGCTTCGGTGGCGGCGTC
CTCTCAACGGAGCCGCGACCACGACGGCGTGGCGATCGTGAACGACTGGC
TGAGCGAGAACGCTCCCGCTTAACATTATTGCTATCGGCGGCTGCCCTAT
CGTTGGATCCAGCACGGCGGGCACGATCCCTCGACCGACTACGACGATCG
CGATCTCGCTCCGGCTCTTTTCGCGCCTTGCTGCCCGGTCTTGGAGATTT
GGAGACACGCCTGGGGGAACGGGTGCGAGAGCGGGAACGTGATCGGGCGC
TGGGCTTATCCTTGTCTTTGTCTTTTGCAGCAGCGCCGCCCGCACGTCTT
CGGTTCTTCTCGCTGCGATCCGAATCGCTGGACGACGATGATGAGGAGCT
MXO02469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16788-PA | 1125 | RnpS1-RA | 241..1122 | 900..19 | 4310 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1370 | CG16788-RA | 390..1271 | 900..19 | 4350 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9552767..9553648 | 900..19 | 4350 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:46 has no hits.
MXO02469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:10 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-PA | 241..1125 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:05 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16788-PA | 241..1125 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:46 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 390..1271 | 19..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:40 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 390..1271 | 19..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:40 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9552767..9553648 | 19..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:46 Download gff for
MXO02469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5378489..5379370 | 19..900 | 99 | | Minus |
MXO02469.5prime Sequence
691 bp (126 high quality bases) assembled on 2006-12-21
> MXO02469.5prime
CAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTGAGAAGGAA
AAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCGAGGCGACCAG
CGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATCGGCGTCCT
CCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCGGCTCTTCGCGGAGC
AGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGACTCCTCGAG
CTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAAGAACCGAA
GACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATAAGCCCAGC
GCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGTGTCTCCAA
ATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCGAGATCGCG
ATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGATCCAACGAT
AGGGCAGCCGCCGATAGCATTAATGTTAAGCGGGAGCGTTCTCGCTCAGC
CAGTCGTTCGCGATCGCCACGCCGTCGTGGTCGCGGCTCCGTTGAGAGGA
CGCCGCCACCGAATCGAACGTAGCGCTCCCGTTCGCGGACTCGCTCGCCT
TCCCTCAATCCGGTGCGCATTCGTGTCGGTCGGCTTACCCG
MXO02469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16788-PA | 1125 | RnpS1-RA | 1..644 | 9..652 | 3045 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1370 | CG16788-RA | 150..832 | 9..691 | 3235 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9552688..9553209 | 170..691 | 2445 | 97.9 | Plus |
3R | 32079331 | 3R | 9552257..9552422 | 7..172 | 800 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:10 has no hits.
MXO02469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:12 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-PA | 1..683 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:05 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16788-PA | 1..683 | 9..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:57 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 140..832 | 1..691 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:21 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 140..832 | 1..691 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:21 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9552257..9552422 | 7..172 | 98 | -> | Plus |
3R | 9552691..9553209 | 173..691 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:57 Download gff for
MXO02469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5377979..5378144 | 7..172 | 98 | -> | Plus |
arm_3R | 5378413..5378931 | 173..691 | 97 | | Plus |