Clone MXO02471 Report

Search the DGRC for MXO02471

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:71
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1789-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02471.3prime Sequence

735 bp (735 high quality bases) assembled on 2006-12-21

> MXO02471.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGCGTTCGTAGCGGAATTTGTAGACGG
GCGCACTGTCCTTGGTTCCCGGCTTTATTTTCCTCGGCTTCAGTAGGCGT
GGCTGCTTGAGGGTGTTCTTCAGCTGAATCTTCTGCTGGACGATGCCGAG
TTCCCTTTCACGCTGCTCGCGTTTCTTCAGCTCGTTGATGCGCTGCTGTT
TGATGGGGTTTGGTTCAGTTGTTTTCGATTTCTTCTTCTTTTCCTCCTCT
TCCTCCTCGTCATCATGCTTTAAAAGCCATTCGCCCATGTCCAACTCCAT
GTATCCGTCTTCGTCAAATTTGATACGTTTGTTGGCTGCTCCCTTAATGG
CATCCACGTCCACCAGCGAGGCCTTCAAGCGTTCGATCTTCTTGCGCTCC
ATGGTGCGCTTCATCACCACGTACTTGAGGTCCTGCGTCTGCATGAGGGC
CAATTGCTCGGGCGTGTGCTCGTCCTTCGTGTCCTTCTCGTGGTGCTCAT
CGTTGGACAGCTTGGAGTTGATCATATGGTGGTAGAACTCATCGGGATTC
TTGTTCTGCGCCCGGCGGTACAATAGCTTCAAGGTCTTTTGCTTTTTCTG
TGCGTCGATGGCTCGCTTCTTGTAGTCCTTTTTCTTCTCCAGGAATCCCA
GATGCTGGCGCGACTCCGGCTGGTGGCGCTCCCTGTGCACCTTCTGGTTG
CTTTTCGACGCATTCTTCCACGATGACATGTCGAC

MXO02471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..711 729..19 3555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..797 729..19 3555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 729..226 2520 100 Minus
X 23542271 X 8721233..8721440 226..19 1040 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:49 has no hits.

MXO02471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:17 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 18..729 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:07 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 18..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:21 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 80..797 19..735 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:32 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 80..797 19..735 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:32 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8720599..8721109 226..735 99 -> Minus
X 8721234..8721440 19..225 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:21 Download gff for MXO02471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614632..8615142 226..735 99 -> Minus
arm_X 8615267..8615473 19..225 100   Minus

MXO02471.5prime Sequence

735 bp (735 high quality bases) assembled on 2006-12-21

> MXO02471.5prime
CAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACCAGAAGGTG
CACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGATTCCTGGA
GAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAAAAAGCAAA
AGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATCCCGATGAG
TTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAGCACCACGA
GAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCTCATGCAGA
CGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGCGCAAGAAG
ATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATTAAGGGAGC
AGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGAGTTGGACA
TGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGGAGGAAAAG
AAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAGCAGCGCAT
CAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGGCATCGTCC
AGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCCTACTGAAG
CCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTCTACAAATT
CCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACC

MXO02471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..711 9..719 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..797 9..719 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 9..512 2520 100 Plus
X 23542271 X 8721233..8721440 512..719 1040 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:53:15 has no hits.

MXO02471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:19 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 9..720 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:07 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 9..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:19 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 9..719 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:53 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 9..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:53 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 9..512 100 -> Plus
X 8721234..8721440 513..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:19 Download gff for MXO02471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 9..512 100 -> Plus
arm_X 8615267..8615473 513..719 100   Plus