MXO02472.3prime Sequence
858 bp (822 high quality bases) assembled on 2006-12-21
> MXO02472.3prime
ATGGTCTAGAAAGCTTGCCGTTGATCCATTGGAAGATTCCTCCTGTGCCT
CGGATTTGTCCTCCTCCTTGCTGTCACCATCGGCATCTGTTCCATCATCG
CCAGGTTGGCTTGGATCTGGATTGCTGGAGCTACTGCCGTTGCTCTCGGC
CAAATCGTTCTGGTCGAAACCATTCGTGTATTCCGGCGTTGGAGCCGTGT
CATTGGCGCTGGGCGGCGGGGTAATCTTCCGCAGCTGCTGACGGGCGGCA
TGGACGATCTTTTCCAGCTCGACGCACTCCGTCTCGATCTCGTAGTTCTT
GGAGACCAGCAGCACCCAATGGGCTTCCAGGGAGCGCAGTCGCTCGCCGG
CCTGCGTTTGCGCCTGCTTGCGCTGCCAGTTGACATCTTGAATGTCCTTC
TTCAGCTGCTGCAGCTGGAGCTGCGCCTTCGCCTGCATGGCGGTGAAGAC
CTCCAGGTAGGACTTCCATGCCTCCGTGCCGTAGTCGAGCATTAGCTCCA
GGTTGAGAGAGCGCACCCACTGGTGCTCCAGCTGGGCCATCGAGTTCTCA
ATGGCCTCCTGCCAGGCGGACACCTCCGACAATTTGCCCGATGGCGGCGG
TGGCAGTTCGTAGCGCTTCATGGAGAGCGTCTCCATGGGCAGGCGGTTCT
GGATGCGCTCGAACTCGTTGGCCATCAGCGGAGTCTCAAAGGGCGAGCTG
GCGGGCAGTGGCAGATGGTCAAGGTAATTTTTTGTGGGCCTATAGCGCCG
GCATTCCTCCTCCACCATGGCGAGAGCCGATTCCCGGACGCCCACATCGT
CATAGCCGTGATCTATGTAGGGCAGAGCATCCACAATAACTTCGCCAGCC
ATGTCGAC
MXO02472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..834 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..917 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921373..27922132 | 19..778 | 3800 | 100 | Plus |
| 3R | 32079331 | 3R | 27922198..27922273 | 777..852 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:13 has no hits.
MXO02472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:21 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:08 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:18 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 81..924 | 10..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:23 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 81..924 | 10..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:23 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921366..27922131 | 10..777 | 99 | <- | Plus |
| 3R | 27922199..27922275 | 778..858 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:18 Download gff for
MXO02472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747088..23747853 | 10..777 | 99 | <- | Plus |
| arm_3R | 23747921..23747997 | 778..858 | 95 | | Plus |
MXO02472.5prime Sequence
829 bp (828 high quality bases) assembled on 2006-12-21
> MXO02472.5prime
CAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTCTGCCCTACATAGAT
CACGGCTATGACGATGTGGGCGTCCGGGAATCGGCTCTCGCCATGGTGGA
GGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTACCTTGACCATCTGC
CACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGATGGCCAACGAGTTC
GAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTCTCCATGAAGCGCTA
CGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGAGGTGTCCGCCTGGC
AGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGCACCAGTGGGTGCGC
TCTCTCAACCTGGAGCTAATGCTCGACTACGGCACGGAGGCATGGAAGTC
CTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGCGCAGCTCCAGCTGC
AGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGCAGCGCAAGCAGGCG
CAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAAGCCCATTGGGTGCT
GCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTGCGTCGAGCTGGAAA
AGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGATTACCCCGCCGCCC
AGCGCCAATGACACGGCTCCAACGCCGGAATACACGAATGGTTTCGACCA
GAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAGCAATCCAGATCCAA
GCCAACCTGGCGATGATGGAACAGATGCCGATGGTGACAGCAAGGAGGAG
GACAAATCCGAGGCACAGGAGGAATCTTC
MXO02472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..904 | 9..829 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921386..27922132 | 829..83 | 3735 | 100 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:08 has no hits.
MXO02472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:23 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..821 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:08 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..821 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:33 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..904 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:41 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..904 | 9..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:41 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921386..27922131 | 84..829 | 100 | <- | Minus |
| 3R | 27922199..27922273 | 9..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:33 Download gff for
MXO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747108..23747853 | 84..829 | 100 | <- | Minus |
| arm_3R | 23747921..23747995 | 9..83 | 100 | | Minus |
