Clone MXO02473 Report

Search the DGRC for MXO02473

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:73
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG15514-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02473.3prime Sequence

723 bp (664 high quality bases) assembled on 2006-12-21

> MXO02473.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCACTACGTTCATGTCCAGGAGAAGCT
TTTTGGTCTGCAGATCAATGAGCCGCCGCTTGGCCCTGGCCAACTCGGCC
ATCTCGTTGTAGTATATCGTTTCCGCCTTGAGCTTCTCGTCCAGCTGTGT
GGTGGACTCCGCCAGCGAGGCGCTGTCCTGCGGAATCATGTTCTGCATCT
CCGCCGGCTCCGGCTCATCGCACCTGTCCACCACCACGGAGTCCGAGTTG
TCCACAACGTACTCGTAGAAGGGTTCCTGCAGCGAAATCGAAGTGACCTC
TTCTTCAAGGTGATCGGCCACCTTTTCGATGATGCTGTCCACATCGTCAA
AGTTGACTTTCTCCAGGGGATCAGCCGCCTGCCTACGCTCCAGGCTGGCG
TAGGAGTCCTTCTTGGGTGTCATGAGGTGCTGGTGCGAGTGATTCAGCGT
CTTGGCCAGGCTGGTGTGACGACGCACAATGTGTCGCATCAGATTGGAGG
ACGAGTGCTTCGAGGAGAGCGTCTTGCCGCAGTGCATACATTTGGCCATG
AATTCGGAGATGCGGATAAAGTGCGCCCACAGTTTATTGTTCTTCCCAAT
GACCTTGTTGCGCATCTCCTCCTGGCTGTGCCGCTCCATCTGCTCTTGTT
CGAGCTTCGCGTTCATGATGCCGCGCACCGCCGACTTGGTCTCGCCCTCT
CCGAACTCCATGCTCAAGTCCTC

MXO02473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15514-PA 930 CG15514-RA 223..927 723..19 3475 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15514-RA 1369 CG15514-RA 363..1067 723..19 3495 99.7 Minus
CG15514-RB 1348 CG15514-RB 363..1046 723..19 3170 96.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29860705..29861132 296..723 2110 99.5 Plus
3R 32079331 3R 29860357..29860637 19..299 1405 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:48:08 has no hits.

MXO02473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:24 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-PA 223..930 18..723 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:08 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-PA 223..930 18..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:49 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-RA 363..1071 13..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:42 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-RA 363..1071 13..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:42 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29860353..29860635 13..297 98 <- Plus
3R 29860707..29861132 298..723 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:49 Download gff for MXO02473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25686075..25686357 13..297 98 <- Plus
arm_3R 25686429..25686854 298..723 99   Plus

MXO02473.5prime Sequence

814 bp (732 high quality bases) assembled on 2006-12-21

> MXO02473.5prime
CAGTCGACATGGTTGGGAAAAACTTCAAGGCTCTAGCGCACTTCCACCGA
CTGACCGAGTACATAGTTCAGTGCAAACACTGCGAGAAGACATTGTCCTC
CAAACACACATCCTCCAACTTGACGCGCCACTTAATCCGGAACCACAAGC
TCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGGTAAGATGCTGGCGGAG
CTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGGACCTGAGCATGGAGCT
CGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGCATCATGAACGCGAAGC
TCGAACAAGAGCAGATGGAGCGGCACAGCCAGGAGGAGATGCGCAACAAG
GTCATTGGGAAGAACAATAAACTGTGGGCGCACTTTATCCGCATCTCCGA
ATTCATGGCCAAATGTATGCACTGCGGCAAGACGCTCTCCTCGAAGCACT
CGTCCTCCAATCTGATGCGACACATTGTGCGTCGTCACACCAGCCTGGCC
AAGACGCTGAATCACTCGCACCAGCACCTCATGACACCCAAGAAGGACTC
CTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGATCCCCTGGAGAAAGTCA
ACTTTGACGATGTGGACAGCATCATCGAAAAGGTGGCCGATCACCTTGAA
GAAGAGGTCACTTCGATTTCGCTGCAGGAACCCTTCTACGAGTACGTTGT
GGACAACTCGGACTCCGTGGTGGTGGACAGGTGCGATGAGCCGGAGCCGG
CGGAGATGCAGAACATGATTCCGCAGGACAGCGCCTCGCTGGCGGAGACC
ACCACACAGCTGGA

MXO02473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15514-PA 930 CG15514-RA 1..806 9..814 4005 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15514-RA 1369 CG15514-RA 141..946 9..814 4015 99.9 Plus
CG15514-RB 1348 CG15514-RB 141..925 9..814 3690 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29860705..29861354 658..9 3250 100 Minus
3R 32079331 3R 29860478..29860637 814..655 785 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 21:08:39 has no hits.

MXO02473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:26 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-PA 1..805 9..813 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:09 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-PA 1..805 9..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:16 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-RA 136..945 1..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:56 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15514-RA 136..945 1..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:56 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29860479..29860635 657..813 99 <- Minus
3R 29860707..29861359 1..656 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:16 Download gff for MXO02473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25686201..25686357 657..813 99 <- Minus
arm_3R 25686429..25687081 1..656 99   Minus