MXO02475.3prime Sequence
831 bp (831 high quality bases) assembled on 2006-12-21
> MXO02475.3prime
ATGGTCTAGAAAGCTTGCATTGTTCTGGGGTTTCGACCATTCGACGCTGA
GGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGCC
GCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTCC
GGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTCT
TCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGAT
ATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCTT
TTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCAT
CGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGTG
TCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGTT
GCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCGT
TGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTCG
GACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGTC
GCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACCT
GCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTTG
TTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCGT
CGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAGG
ATTTGATCGTTTCAACGCCCGGCATGTCGAC
MXO02475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 694..726 | 147..115 | 165 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 763..806 | 78..35 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..898 | 825..19 | 4035 | 100 | Minus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 231..25 | 570 | 85 | Minus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 726..401 | 385 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609376..2610182 | 19..825 | 4035 | 100 | Plus |
3R | 32079331 | 3R | 20408936..20409142 | 231..25 | 570 | 85 | Minus |
3R | 32079331 | 3R | 20408420..20408745 | 726..401 | 370 | 74.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:23 has no hits.
MXO02475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:31 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:10 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:00 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:36 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:36 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609371..2610186 | 11..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:00 Download gff for
MXO02475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503404..2504219 | 11..831 | 99 | | Plus |
MXO02475.5prime Sequence
798 bp (651 high quality bases) assembled on 2006-12-21
> MXO02475.5prime
CAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGGCGGACGAG
GTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACGGTGGAGAA
CGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGACAAGAAGA
CGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGCCCAAGACG
GTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAGAACGACAA
GCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGATCATCATGC
AGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGCTGCTAGAT
CCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAGCATTGGTC
GGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATATGATGGAGA
AGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCAAGTCCGGC
AAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCGCTGGGAAT
GCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCTGTCGGAGT
CGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTGGACCGCAG
AGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGCAAGGGATT
CGCCTACGTGCACTTCATGCAGCGCGAGGATGCGGCCGCCGCCATCGAGA
TCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCGAATGGT
MXO02475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 1..790 | 9..798 | 3900 | 99.7 | Plus |
CG10881-PA | 822 | CG10881-RA | 694..724 | 687..717 | 155 | 100 | Plus |
CG10881-PA | 822 | CG10881-RA | 763..800 | 756..793 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..881 | 9..798 | 3920 | 99.7 | Plus |
CG10881-RA | 979 | CG10881-RA | 672..867 | 603..798 | 545 | 85.2 | Plus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 108..433 | 385 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609393..2610182 | 798..9 | 3920 | 99.7 | Minus |
3R | 32079331 | 3R | 20408936..20409131 | 603..798 | 545 | 85.2 | Plus |
3R | 32079331 | 3R | 20408420..20408745 | 108..433 | 370 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:38 has no hits.
MXO02475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:32 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:10 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..790 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:17 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 84..881 | 1..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:38 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 84..881 | 1..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:38 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609393..2610189 | 1..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:17 Download gff for
MXO02475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503426..2504222 | 1..798 | 99 | | Minus |