Clone MXO02475 Report

Search the DGRC for MXO02475

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:75
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8636-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02475.3prime Sequence

831 bp (831 high quality bases) assembled on 2006-12-21

> MXO02475.3prime
ATGGTCTAGAAAGCTTGCATTGTTCTGGGGTTTCGACCATTCGACGCTGA
GGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGCC
GCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTCC
GGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTCT
TCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGAT
ATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCTT
TTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCAT
CGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGTG
TCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGTT
GCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCGT
TGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTCG
GACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGTC
GCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACCT
GCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTTG
TTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCGT
CGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAGG
ATTTGATCGTTTCAACGCCCGGCATGTCGAC

MXO02475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 1..807 825..19 4035 100 Minus
CG10881-PA 822 CG10881-RA 694..726 147..115 165 100 Minus
CG10881-PA 822 CG10881-RA 763..806 78..35 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..898 825..19 4035 100 Minus
CG10881-RA 979 CG10881-RA 672..878 231..25 570 85 Minus
CG10881-RA 979 CG10881-RA 156..481 726..401 385 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609376..2610182 19..825 4035 100 Plus
3R 32079331 3R 20408936..20409142 231..25 570 85 Minus
3R 32079331 3R 20408420..20408745 726..401 370 74.2 Minus
Blast to na_te.dros performed on 2014-11-28 23:11:23 has no hits.

MXO02475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:31 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:10 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:00 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 11..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:36 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 11..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:36 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2609371..2610186 11..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:00 Download gff for MXO02475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503404..2504219 11..831 99   Plus

MXO02475.5prime Sequence

798 bp (651 high quality bases) assembled on 2006-12-21

> MXO02475.5prime
CAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGGCGGACGAG
GTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACGGTGGAGAA
CGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGACAAGAAGA
CGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGCCCAAGACG
GTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAGAACGACAA
GCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGATCATCATGC
AGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGCTGCTAGAT
CCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAGCATTGGTC
GGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATATGATGGAGA
AGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCAAGTCCGGC
AAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCGCTGGGAAT
GCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCTGTCGGAGT
CGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTGGACCGCAG
AGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGCAAGGGATT
CGCCTACGTGCACTTCATGCAGCGCGAGGATGCGGCCGCCGCCATCGAGA
TCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCGAATGGT

MXO02475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 1..790 9..798 3900 99.7 Plus
CG10881-PA 822 CG10881-RA 694..724 687..717 155 100 Plus
CG10881-PA 822 CG10881-RA 763..800 756..793 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..881 9..798 3920 99.7 Plus
CG10881-RA 979 CG10881-RA 672..867 603..798 545 85.2 Plus
CG10881-RA 979 CG10881-RA 156..481 108..433 385 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609393..2610182 798..9 3920 99.7 Minus
3R 32079331 3R 20408936..20409131 603..798 545 85.2 Plus
3R 32079331 3R 20408420..20408745 108..433 370 74.2 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:38 has no hits.

MXO02475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:32 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..790 9..798 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:10 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..790 9..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:17 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 84..881 1..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:38 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 84..881 1..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:38 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2609393..2610189 1..798 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:17 Download gff for MXO02475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503426..2504222 1..798 99   Minus